Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3245g00005 ATGGAATCTGATCATGATCAGCAAGCAGCAATATCTGAAAATCCCTCTGATGGGGAGGACCAAGGCGCAACTCACGTGACATCCAGGTCCTACGAGTGCAACTTCTGCAGGAGGGGCTTCTCCAATGCACAGGCACTGGGGGGGCACATGAACATCCACAGAAAAGACAAAGCCAAGCTCAAGCAACAACAATCTTCAAATCAACCATCTTTGGACAAGGTTGTCCCTCCACAGGATCAGACCAAGTCTGGTGAAGAACGGAACACGCCAAAATGGAATTGGAATGTGTCTCAAGAAGAACATGCCTCCTCTAGAGCATCTCACACAAGGCAACAGCTTCCACTCTTTGAAGAATCACCAACCAGCAGTGAAACACTGAAGCCACAAGGTCAAAATACCACTGATGGAGCTTTGTTATCTACCCGAGATTCATCGTTGAAGTTAGACCTTGAACTCAGACTCGGACTTGAACCACAGGATTCGTCACCAGAAACGGGTACAAGAAATTTTTTTTGA 516 0.469 MESDHDQQAAISENPSDGEDQGATHVTSRSYECNFCRRGFSNAQALGGHMNIHRKDKAKLKQQQSSNQPSLDKVVPPQDQTKSGEERNTPKWNWNVSQEEHASSRASHTRQQLPLFEESPTSSETLKPQGQNTTDGALLSTRDSSLKLDLELRLGLEPQDSSPETGTRNFF 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3245g00005 171 Gene3D Classic Zinc Finger 18 91 - -
Vium3245g00005 171 ProSitePatterns Zinc finger C2H2 type domain signature. 33 53 IPR013087 -
Vium3245g00005 171 MobiDBLite consensus disorder prediction 47 142 - -
Vium3245g00005 171 PANTHER OS07G0101800 PROTEIN 1 158 - -
Vium3245g00005 171 SUPERFAMILY beta-beta-alpha zinc fingers 28 58 IPR036236 -
Vium3245g00005 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 31 58 IPR013087 -
Vium3245g00005 171 MobiDBLite consensus disorder prediction 1 27 - -
Vium3245g00005 171 MobiDBLite consensus disorder prediction 62 141 - -
Vium3245g00005 171 MobiDBLite consensus disorder prediction 8 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3245g00005 Vium-Chr3245 60269 60784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3245g00005 10 155 C2H2 Transcription Factor Family AT3G09290 37.179 2.70e-18 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium3245g00005 None None None