Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3244g00002 ATGGCCAACAAATTCCGTAATTTCCACCCGAAAACAACAACATTTCTCATCCTCCTCATACCCTTGTTATTTATCTCCCTGGTTTTCGCAGAAACCCCATCAACCGCTTCTGCATCTCCCATAACCATATGCAAATCCACCCCAGACCCATCTTATTGCAGTTCCGTTTTCCCTCCCCAAAACGCCAACGTTTACGACTATGCCCGATTCTCACTGAGAGAGTCTCTTTCACAAGGAACCAAGTTCTTGAACTTGGTTAACAGACACCTCCAACGCCGCTCTTCTCTTTCAACCTCCGCAATCCACGCGCTCCAAGATTGCCAAACCCTCGCCGAACTCAACGTCGACTTTCTCTCCAGTTCCTTCCAAACATTGAACCACACAACCACGCTCCTTCCCAGTTCACGAGCTGACGACATCCAAACCCTTCTAAGCGCCATTTTAACCAACCAACAAACCTGCTTGGAAAGCCTCCAAGTCACAGCCTCCGCTTGGCGTGTCAGCAGCGGACTCTTCCTACCGCTTTCCAACGACACCAAGCTCTACACCGTCTCTCTCGCGCTCTTCACCAAGGGCTGGGTCCCAACCAACGCTAACGTTACCGCGTTTCACCCACCCTCCAAACACCACGCCTCTCGAAACGGTCGTTTACCGCTAAAGATATCCGGCAGAACGCGCGCGATCTACGACTCCGTGAGTCGGAGAAAGCTCCTTCAGGGGAAGGTGGGTGACGAGGTGAGGGTGAAGGACGTCATCACTGTCAGCAAAGATGGTAGCGGGAACTTCACCACCTTGCACGACGCCATTACGGCGGCTCCCAACAAGTCTTCCTCTACCTCAGGGTACTTCCTCATCTACGTCACTGCGGGTGTTTACGAGGAAAATGTGTCAATTGATAAGGAAAAGACGTACTTGATGATAGTTGGAGATGGCATCAACAAGACAATTATTACAGGGAATCGCAGTGTTGTTGATGGTTGGACTACCTTTAATTCCGCAACTTTTGCTGTTGTTGCTGAAGGGTTTGTAGCTGTTAACATAACTTTCCGTAACACTGCTGGAGCGAGCAAGGGTCAAGCAGTGGCACTAAGAAGTGGAGCAGATTTGTCAACATTCTATAGCTGCAGCTTTGAAGGGTATCAAGATACATTGTATACACATTCTCTCAGGCAATTTTATCGAGAATGTGACATATATGGCACCGTTGACTTCATATTTGGAAATGCTGCCGTTGTTATGCAAAACTGCAATATCTATTCTCGTCTCCCTCTGAAAGGACAATTCAACACGATCACAGCTCAAGGAAGAACTGATCCGAATCAAAACACAGGAACTTCCATACAGAATGCAACTGTGAAAGCTGCTGATGATTTGGCTCCAGCTGTTGGCACCGTAGAAACCTACCTTGGGAGGCCATGGAAGGAATATTCAAGGACAGTTATCATGCAGTCCTTTATGGACAGTTTTATAAACCCTGCTGGTTGGCATGAATGGAGTGGTGATTTTGAATCGAGTAGCTTGTACTACGAAGAATATAATAACACAGGACCTGCTTCTAACACTTCCAACAGAGTCACCTGGCCTGGTTATCACGTCATCAATGCCACAGATGCATCTAATTTCACCGTCTCTAACTTCTTGGCTGGGGATAATTGGATTCCCCAAACTGGGGTCCCATACTTAACTGGCTTGATACAGTAA 1701 0.4762 MANKFRNFHPKTTTFLILLIPLLFISLVFAETPSTASASPITICKSTPDPSYCSSVFPPQNANVYDYARFSLRESLSQGTKFLNLVNRHLQRRSSLSTSAIHALQDCQTLAELNVDFLSSSFQTLNHTTTLLPSSRADDIQTLLSAILTNQQTCLESLQVTASAWRVSSGLFLPLSNDTKLYTVSLALFTKGWVPTNANVTAFHPPSKHHASRNGRLPLKISGRTRAIYDSVSRRKLLQGKVGDEVRVKDVITVSKDGSGNFTTLHDAITAAPNKSSSTSGYFLIYVTAGVYEENVSIDKEKTYLMIVGDGINKTIITGNRSVVDGWTTFNSATFAVVAEGFVAVNITFRNTAGASKGQAVALRSGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVMQNCNIYSRLPLKGQFNTITAQGRTDPNQNTGTSIQNATVKAADDLAPAVGTVETYLGRPWKEYSRTVIMQSFMDSFINPAGWHEWSGDFESSSLYYEEYNNTGPASNTSNRVTWPGYHVINATDASNFTVSNFLAGDNWIPQTGVPYLTGLIQ 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3244g00002 566 FunFam Pectinesterase 41 191 - -
Vium3244g00002 566 PANTHER PECTINESTERASE 27 554 - -
Vium3244g00002 566 SMART PMEI_2 35 188 IPR006501 GO:0004857
Vium3244g00002 566 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Vium3244g00002 566 NCBIfam pectinesterase inhibitor domain 16 162 IPR006501 GO:0004857
Vium3244g00002 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 191 IPR035513 -
Vium3244g00002 566 FunFam Pectinesterase 245 564 - -
Vium3244g00002 566 Pfam Plant invertase/pectin methylesterase inhibitor 42 187 IPR006501 GO:0004857
Vium3244g00002 566 CDD PMEI-like_3 42 193 - -
Vium3244g00002 566 SUPERFAMILY Pectin lyase-like 249 563 IPR011050 -
Vium3244g00002 566 Gene3D - 245 564 IPR012334 -
Vium3244g00002 566 Pfam Pectinesterase 252 550 IPR000070 GO:0030599|GO:0042545
Vium3244g00002 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 191 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3244g00002 Vium-Chr3244 28585 34419 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3244g00002 16 565 Carbohydrate Esterase AT4G02330 60.984 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3244g00002 K01051 - gmx:100790729 876.315