Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium323g00009 ATGTCAATCTTCGACGGAGCTTTCATGAACACGCAACTTTCCAAGCACACTTCTATCTTCGGGCTCCGTCTCTGGGTCGTGATCGGAATCCTCATCGGCGTCTTCATCGTCTTCACGCTCTTCCTCCTCTCTCTCTGTCTAGTATCTCGTCGGAACCGCCGCCGTTCTGTCGCCGGCTATAAGGTCGCCGGATCCGCCCAAGCGGCGAAGGAAATTCATACTATAGTGCACCTTCCTGGATCCCACATGCCCCGGCCTCCGGCGAAGGCGCCGGAGATCCAGGTGGAGATGGGGAAGGCGGAACACCGGGTGGTTGTCCACTGCGATAGGGTTTCGAGTGAGGAGAGTAAGGGAACGATGGGGAGTGGTTGCGAAACGACGTCGTCTTTTGGAAGTGGGAGTGTTGGTGGGCTAGGGCTTGGGCCTGAGGTTTCTCATCTTGGGTGGGGGAGGTGGTACACTCTGAGGGAGCTTGAGGATGCCACTGGAGGGTTGTGTCCGGAAAACGTGGTTGGTGAAGGTGGCTATGGCATTGTCTATCATGGGGTGCTCAATGATGGTACCAAAATTGCTGTCAAGAACCTCTTGAATAACAAGGGCCAAGCTGAGAAAGAATTTAAAGTAGAAGTAGAAGCTATTGGTAGAGTGCGACACAAAAATCTTGTTCGGTTGCTTGGATACTGTGTTGAGGGAGCCTACAGGATGCTTGTGTATGAATATGTAGACAATGGTAATCTAGAACAATGGTTGCATGGGGATGTCGGACCTGTCAGCCCTTTGACATGGAACATACGCATGAACATTATTTTGGGAACTGCAAGAGGATTGGCTTATCTTCATGAGGGTCTCGAGCCAAAAGTTGTTCACCGAGACGTGAAATCAAGCAACATACTCATTGATCGCCAATGGAACTCCAAGGTTTCTGATTTTGGACTTGCCAAGCTTTTGTGTTCTGAGAATAGTTATGTCACAACTCGAGTGATGGGAACATTTGGTTATGTTGCACCAGAATATGCCTGCACTGGAATGCTGACTGAGAAGAGTGATATTTATAGCTTTGGAATCCTTATCATGGAGATAATAACTGGAAGAAGCCCTGTTGATTATGCTAGACCACAAGGAGAGGTTAATTTAATAGAATGGTTGAAGACTATGGTCGGGAATAGAAAATCTGAGGAAGTAGTTGATCCTAAGCTCCCTGAGATGCCAGCTTCAAAGGCTCTTAAACGTGCTTTATTGATTGCTCTTCGGTGTGTTGATCCTGATGCAACAAAGAGACCAAAGATGGGACATGTGATCCACATGCTTGAGGCAGACGACATGTTATTCCACAATGAACACAAAACTGATGGAGATTCTTCTCGTTCCTATCAAAATGAACATAAGGACTCAAATTTAGACAAGAGAACAGATGGTGTCACTGATCAAAGTGAAGATGCTAGTAGTAGTAGAAATAATCATCAGGCCACTACATGGAGATGA 1482 0.471 MSIFDGAFMNTQLSKHTSIFGLRLWVVIGILIGVFIVFTLFLLSLCLVSRRNRRRSVAGYKVAGSAQAAKEIHTIVHLPGSHMPRPPAKAPEIQVEMGKAEHRVVVHCDRVSSEESKGTMGSGCETTSSFGSGSVGGLGLGPEVSHLGWGRWYTLRELEDATGGLCPENVVGEGGYGIVYHGVLNDGTKIAVKNLLNNKGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGPVSPLTWNIRMNIILGTARGLAYLHEGLEPKVVHRDVKSSNILIDRQWNSKVSDFGLAKLLCSENSYVTTRVMGTFGYVAPEYACTGMLTEKSDIYSFGILIMEIITGRSPVDYARPQGEVNLIEWLKTMVGNRKSEEVVDPKLPEMPASKALKRALLIALRCVDPDATKRPKMGHVIHMLEADDMLFHNEHKTDGDSSRSYQNEHKDSNLDKRTDGVTDQSEDASSSRNNHQATTWR 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium323g00009 493 MobiDBLite consensus disorder prediction 445 475 - -
Vium323g00009 493 FunFam Probable serine/threonine-protein kinase At1g01540 145 240 - -
Vium323g00009 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 287 299 IPR008271 GO:0004672|GO:0006468
Vium323g00009 493 ProSitePatterns Protein kinases ATP-binding region signature. 171 193 IPR017441 GO:0005524
Vium323g00009 493 PANTHER OS01G0323000 PROTEIN 7 463 - -
Vium323g00009 493 SUPERFAMILY Protein kinase-like (PK-like) 144 437 IPR011009 -
Vium323g00009 493 MobiDBLite consensus disorder prediction 445 493 - -
Vium323g00009 493 CDD STKc_IRAK 171 437 - -
Vium323g00009 493 Gene3D Transferase(Phosphotransferase) domain 1 241 453 - -
Vium323g00009 493 Gene3D Phosphorylase Kinase; domain 1 149 240 - -
Vium323g00009 493 MobiDBLite consensus disorder prediction 476 493 - -
Vium323g00009 493 FunFam Putative receptor-like serine/threonine-protein kinase 241 451 - -
Vium323g00009 493 SMART serkin_6 165 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium323g00009 493 Pfam Protein kinase domain 169 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium323g00009 493 ProSiteProfiles Protein kinase domain profile. 165 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium323g00009 Vium-Chr323 74787 78612 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium323g00009 104 464 Receptor kinase-like Gene Family AT4G02010 41.096 1.12e-92 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vium323g00009 Pkinase 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium323g00009 - - gmx:100800724 860.522