Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium323g00001 GAGGCAGAGAGAGCGGAAGGAGACAAGATGGCGATGGGGAACGACTCGGACGAGTCGACTTTGTCAGATGAGGAGTATGACCCGGTGGAGGAGGTGCAGCGAGTCATCGAATCGGTGGTTCAGTTCGGGGACTACCGGAGGACGCAGCGGAGGGAGTGCCACAACCTCGTGCGCCGTTTCAAGCTCATGTTGCCGATCTTGGAAGAGCTTCGCGACACCCCACAACCCTTTACGAAAAACGGCGTCGCTTGGTTAGTCAAATTCAAGGAGGCGCTATTGTTCGCCAAGGATTTGTTGCAACTGTGCAACCAAGGAAGCAAGATTTACCTCTCTTTGGAGACAGAGACGATAATGGCCACGTTTCAGAAAGTGTATGAAAAATTAAGCCAAGCGTTTGGTGGTGTGCCTTGTGAGGAAATGGGCATCTCGGATGAAGTCAAAGAGCAGCTTGAGCTAATGCACGTGCAACTGAAGCGAGCGAGGAGAAGAACTGATACACAGGACATAGAACTTGCGATGGATATGATGGTAGTGTTCTCTGACGAGGATGATAGAAATTCTGACAGTGCTATAATCGAGAGGCTGGCAAAAAAGTTGGAGCTTCATAGTGTTGAGGAACTTAACATAGAAACAATGGCCATCAGGCAACTTGCAGAAGAAAGAAAAGGGCAACAGATTGAAAGTACTACGCGAATAATCAATCTTCTCAACAAATTCAAACGCGTTGCAGGCATGCCAGAAACCACTGTCCTTGACGATCCTGTCGCACCCAAGATGCTAGAGAGGTGCACCTCTTTGGTCATCCCACACGAGTTTCTCTGCCCAATAACACTAGAAATCATGACAGATCCTGTTATCATAGCAAGTGGACAGACATTTGAAAAGGAAAGCATAGAGAAGTGGTTCGAAGCCAACCACAACACATGCCCAAAGACTAGGCAACCTTTGCAGCACATGTCATTGGCACCAAACTGCGCATTGAGAAATTTGATCGAAGAATGGTGTGTGAACAACAACTTCAAGCTTCCCAAAAAGTACGATTCAGCAAAAGAAAGTTGTCCAGGCAAAGAGGAAATTCCTTGTTTGGTTGACAGCTTAGGGTCCATTCATTTAGAAGAGCAGAGAAAAGCAGTGGAGAAGATACGTATGTTGTCAAAGGAGAATGCTGAGAACAGGGTGTTGGTTGCTGAATGTGGAGGAATACCACCACTGGTGCAACTACTGTCGTATCCAGATTCAAAAATACAAGAGCATGCTGTGACAGCACTTTTGAACCTATCAATTGATGAGGGTAACAAGAGACTTATATCATCAGAAGGTGCGATTCCAGCCATCATAGAAGTTTTGGAGAATGGAAGTTGTGTGGCTAAGGAAAACTCAGCAGCAACTTTATTTAGCTTGTCAATGCTTGATGAGATTAAAGAGATTGTTGGTCGATCAAATGGGTTGCCACCTTTGGTGAAGTTGTTGAAGAATGGAACGGTTAGAGGGAAGAAAGATGCTATCACAGCTCTTTTCAACTTATCACTGAACCAAGCAAACAAAGGTAGGGCCATTAGGGCTGGCATTGTAGCACCCTTGGTTCAGTTGCTGAAGGACGTAAACTTAGGGTTGATTGATGAGGCTCTCTCCATTCTGTTACTCCTTGTCTCAAATTCAGAAGGAAGACAAGAGATTGGACAACTTAGTTTCATCGAAATTCTTGTTCAGTTCATGCGAGAAGGAAGTCCGAAGAACAAGGAATGTGCAGCCTCAGTTCTTCTTGAGTTGTGCTTAAATAACTCATCCTTCATATTGGCAGCACTTCAGTTTGGAGTGTACGAACATTTGATAGAAATCAAACAAAATGGAACAAATAGAGCACAGAGGAAAGCAATGGCAATCTTAGAACTCATAACCAAGAGCGAGCAGATTTAA 1917 0.4486 EAERAEGDKMAMGNDSDESTLSDEEYDPVEEVQRVIESVVQFGDYRRTQRRECHNLVRRFKLMLPILEELRDTPQPFTKNGVAWLVKFKEALLFAKDLLQLCNQGSKIYLSLETETIMATFQKVYEKLSQAFGGVPCEEMGISDEVKEQLELMHVQLKRARRRTDTQDIELAMDMMVVFSDEDDRNSDSAIIERLAKKLELHSVEELNIETMAIRQLAEERKGQQIESTTRIINLLNKFKRVAGMPETTVLDDPVAPKMLERCTSLVIPHEFLCPITLEIMTDPVIIASGQTFEKESIEKWFEANHNTCPKTRQPLQHMSLAPNCALRNLIEEWCVNNNFKLPKKYDSAKESCPGKEEIPCLVDSLGSIHLEEQRKAVEKIRMLSKENAENRVLVAECGGIPPLVQLLSYPDSKIQEHAVTALLNLSIDEGNKRLISSEGAIPAIIEVLENGSCVAKENSAATLFSLSMLDEIKEIVGRSNGLPPLVKLLKNGTVRGKKDAITALFNLSLNQANKGRAIRAGIVAPLVQLLKDVNLGLIDEALSILLLLVSNSEGRQEIGQLSFIEILVQFMREGSPKNKECAASVLLELCLNNSSFILAALQFGVYEHLIEIKQNGTNRAQRKAMAILELITKSEQI 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium323g00001 638 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 399 441 IPR000225 GO:0005515
Vium323g00001 638 SUPERFAMILY ARM repeat 347 633 IPR016024 -
Vium323g00001 638 SUPERFAMILY RING/U-box 267 343 - -
Vium323g00001 638 MobiDBLite consensus disorder prediction 1 27 - -
Vium323g00001 638 Pfam Armadillo/beta-catenin-like repeat 388 427 IPR000225 GO:0005515
Vium323g00001 638 Pfam Armadillo/beta-catenin-like repeat 472 509 IPR000225 GO:0005515
Vium323g00001 638 SMART arm_5 429 469 IPR000225 GO:0005515
Vium323g00001 638 SMART arm_5 552 592 IPR000225 GO:0005515
Vium323g00001 638 SMART arm_5 470 510 IPR000225 GO:0005515
Vium323g00001 638 SMART arm_5 388 428 IPR000225 GO:0005515
Vium323g00001 638 SMART arm_5 511 551 IPR000225 GO:0005515
Vium323g00001 638 SMART Ubox_2 271 334 IPR003613 GO:0004842|GO:0016567
Vium323g00001 638 Pfam U-box domain 268 338 IPR003613 GO:0004842|GO:0016567
Vium323g00001 638 FunFam RING-type E3 ubiquitin transferase 268 340 - -
Vium323g00001 638 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 342 IPR013083 -
Vium323g00001 638 Coils Coil 143 163 - -
Vium323g00001 638 FunFam RING-type E3 ubiquitin transferase 343 638 - -
Vium323g00001 638 Gene3D - 344 638 IPR011989 -
Vium323g00001 638 Gene3D - 24 136 IPR036537 GO:0007166
Vium323g00001 638 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 481 523 IPR000225 GO:0005515
Vium323g00001 638 FunFam RING-type E3 ubiquitin transferase 25 138 - -
Vium323g00001 638 CDD RING-Ubox_PUB 269 321 IPR045210 -
Vium323g00001 638 ProSiteProfiles U-box domain profile. 267 341 IPR003613 GO:0004842|GO:0016567
Vium323g00001 638 PANTHER U BOX DOMAIN-CONTAINING 50 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium323g00001 Vium-Chr323 2086 4845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium323g00001 29 638 U-box Gene Family AT5G42340 62.295 0.0 735
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium323g00001 - - gmx:100777362 1017.68