Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3237g00128 ATGTCTATGATTGAAACCCCCGCCGTCCACCACCTCAGCGGGGGCGCCACCGATCATCACCGTCACTCGTCTAAACGCAAACTCGACGAAGAAGATGACGGAGATTTCTCGGACTTAATCTGTGTGAGGATGCGGAAAGAGGAGGCTGTGAATTCATGGTCGAGCTCCTCCGGCGCCTCTGGCACCGCAGGAAGCGGCTGCTCTGCGGTCGCGCAGAAGCCGCGATCGCACATCCAGTTCTTTGTGCGAATGATGTCAGCCGGAAACACTATTGTGATGCAGGCTTTCCCCGAAGACAGCGTGAAATCGATTCATGAGAGTATCCAAAGCATGAAGGGAATTCCGGTGTTTGAACAGAGATTAATTTATCGGGGGAAGCAGCTTCAGTGGGAACAGACTCTCGCTGAATGTTCCATTCAAAACGACGCCAATCTTCAACTCGTTGGTCGCATGCGCAGTACTGAACACCCTCAGGCATGGCAAATTATCAACGACATGGTTTCCCTCGTGTATCGACTTTGCTGTGGTAACAAGGATTGTGCTGAGTCTTCTGTTAGACACTTTTTGAGTTCTTGCCGAAATACCTTGTCTAAGGCATTGCATGGGCAGTGTGCATGTGTGGTCTTAGAGTTCTGTAAATTGCTTAGGAGAGTTGGAACTAATGACCCTTTGTATCTCTATTGCCGGAGTACCTTTGGGTCCTTGTTGGAAACTGCTGGGGTTTCCTACGCTGGTTCTGATAATGCTAAGGGGTTAGTTTTGATTAAGGACATTTTCCCCTTTGTTTTTGAGCTTGTTAATTGCTTGTTGATGGACTTGGACTCGAGTATGGAATCCCACAGAGCCGTGGGGCCTTTGTCTAATGATGTTGTGGATTTTACTGCCTTCTTAGTGCCTTTGAGAACTGGAATCAAGGAGCAACAAGCTGTCAATGGTTCTATGGCTCAAGACAAAAGTAATAAGGATCTCTTGCACGCCAAAGAGATTGAATATCTTCACTGTTTGTACATGCAGTTATTGAACAAAATCGACCAGTGCCTTCAAAAAATGGACCAGAACTTGGCTGGCCAGGAAATGATGGAAGGGGATAATCCTTATCCTGGGTGGTCTCATTATCTTTCCATCTTGAAGGAGTTGTATCAAGTTTCTAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGAGTGTTTTGAGGCGACATAGAAATGTGCTGTGTCTGTTGATTGTTCGATATGCAAAGAGAACTGATGAGCATCAGTGGATTCTGGAGCATAGGTTTGTGACCAATTTTGAGTCTAGAAGGCATTTGGCCATGATGATGTTCCCAGAGGTCAAAGAAGACTATGAGGAGTTGCACGAGATGCTTATTGACAGGTCTCAGTTATTGGCTGAGTCTTTTGAATACATAGCGCGTGCTGAGCCTGAATCTCTACATGTTGGTTTATTTATGGAATTCAAAAATGAGGAAGCTACTGGCCCAGGTGTACTAAGGGAGTGGTTTCTTCTGGTATGCCAAGCAATATTCAATCCACAAAATGCACTTTTTGTGGCATGCCCAACTGACAGAAGGAGATTTTTCCCTAATCCTGGTAAGTTTTTCCTGCATTTTTGA 1611 0.4556 MSMIETPAVHHLSGGATDHHRHSSKRKLDEEDDGDFSDLICVRMRKEEAVNSWSSSSGASGTAGSGCSAVAQKPRSHIQFFVRMMSAGNTIVMQAFPEDSVKSIHESIQSMKGIPVFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQIINDMVSLVYRLCCGNKDCAESSVRHFLSSCRNTLSKALHGQCACVVLEFCKLLRRVGTNDPLYLYCRSTFGSLLETAGVSYAGSDNAKGLVLIKDIFPFVFELVNCLLMDLDSSMESHRAVGPLSNDVVDFTAFLVPLRTGIKEQQAVNGSMAQDKSNKDLLHAKEIEYLHCLYMQLLNKIDQCLQKMDQNLAGQEMMEGDNPYPGWSHYLSILKELYQVSKLYDGAEEKLWSVLRRHRNVLCLLIVRYAKRTDEHQWILEHRFVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLAESFEYIARAEPESLHVGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPTDRRRFFPNPGKFFLHF 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3237g00128 536 SUPERFAMILY Hect, E3 ligase catalytic domain 448 529 IPR035983 GO:0004842
Vium3237g00128 536 Gene3D Hect, E3 ligase catalytic domains 411 535 - -
Vium3237g00128 536 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 71 166 - -
Vium3237g00128 536 MobiDBLite consensus disorder prediction 1 32 - -
Vium3237g00128 536 PRINTS Ubiquitin signature 110 130 IPR019956 -
Vium3237g00128 536 PRINTS Ubiquitin signature 131 152 IPR019956 -
Vium3237g00128 536 PRINTS Ubiquitin signature 89 109 IPR019956 -
Vium3237g00128 536 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 78 531 - -
Vium3237g00128 536 SUPERFAMILY Ubiquitin-like 78 165 IPR029071 -
Vium3237g00128 536 ProSiteProfiles Ubiquitin domain profile. 78 154 IPR000626 GO:0005515
Vium3237g00128 536 MobiDBLite consensus disorder prediction 14 32 - -
Vium3237g00128 536 Pfam Ubiquitin family 81 152 IPR000626 GO:0005515
Vium3237g00128 536 Gene3D - 71 176 - -
Vium3237g00128 536 ProSiteProfiles HECT domain profile. 473 529 IPR000569 GO:0004842
Vium3237g00128 536 SMART ubq_7 78 150 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3237g00128 Vium-Chr3237 813548 815546 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3237g00128 78 152 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.000 9.85e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3237g00128 - - gmx:100789233 847.04