Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3237g00127 ATGTCTATGATTGAAACCCCCGCCGTCCACCACCTCAGCGGGGGCGCCACCGATCATCACCGTCACTCGTCTAAACGCAAACTCGACGAAGAAGATGACGGAGATTTCTCGGACTTAATCTGTGTGAGGATGCGGAAAGAGGAGGCTGTGAATTCATGGTCGAGCTCCTCCGGCGCCTCTGGCACCGCAGGAAGCGGCTGCTCTGCGGTCGCGCAGAAGCCGCGATCGCACATCCAGTTCTTTGTGCGAATGATGTCAGCCGGAAACACTATTGTGATGCAGGCTTTCCCCGAAGACAGCGTGAAATCGATTCATGAGAGTATCCAAAGCATGAAGGGAATTCCGGTGTTTGAACAGAGATTAATTTATCGGGGGAAGCAGCTTCAGTGGGAACAGACTCTCGCTGAATGTTCCATTCAAAACGACGCCAATCTTCAACTCGTTGGTCGCATGCGCAGTACTGAACACCCTCAGGCATGGCAAATTATCAACGACATGGTTTCCCTCGTGTATCGACTTTGCTGTGGTGAGACTGTTCACGATTCCTTGAAGACTATCAAGGGGTTAATCACCAGTTACTTGAACATGACTCCGAGGATTGACAACGAATCTGCTTCTGGGTATTTTCAGATTTTCATGTCTTCTTCTGCTCCTGACGTGCTTGTTATGCTCTATGTGTCCCCTTATGCAGGTAACAAGGATTGTGCTGAGTCTTCTGTTAGACACTTTTTGAGTTCTTGCCGAAATACCTTGTCTAAGGCATTGCATGGGCAGTGTGCATGTGTGGTCTTAGAGTTCTGTAAATTGCTTAGGAGAGTTGGAACTAATGACCCTTTGTATCTCTATTGCCGGAGTACCTTTGGGTCCTTGTTGGAAACTGCTGGGGTTTCCTACGCTGGTTCTGATAATGCTAAGGGGTTAGTTTTGATTAAGGACATTTTCCCCTTTGTTTTTGAGCTTGTTAATTGCTTGTTGATGGACTTGGACTCGAGTATGGAATCCCACAGAGCCGTGGGGCCTTTGTCTAATGATGTTGTGGATTTTACTGCCTTCTTAGTGCCTTTGAGAACTGGAATCAAGGAGCAACAAGCTGTCAATGGTTCTATGGCTCAAGACAAAAGTAATAAGGATCTCTTGCACGCCAAAGAGATTGAATATCTTCACTGTTTGTACATGCAGTTATTGAACAAAATCGACCAGTGCCTTCAAAAAATGGACCAGAACTTGGCTGGCCAGGAAATGATGGAAGGGGATAATCCTTATCCTGGGTGGTCTCACTATCTTTCCATCTTGAAGGAGTTGTATCAAATTTCTAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGAGTGTTTTGAGGCGACATAGAAATGTGCTGTGTCTGTTGATTGTTCGATATGCAAAGAGAACTGATGAGCATCAGTGGATTCTGGAGCATAGGTTTGTGACCAATTTTGAGTCTAGAAGGCATTTGGCCATGATGATGTTCCCAGAGGTCAAAGAAGACTATGAGGAGTTGCACGAGATGCTTATTGACAGGTCTCAGTTATTGGCTGAGTCTTTTGAATACATAGCGCGTGCTGAGCCTGAATCTCTACATGTTGGTTTATTTATGGAATTCAAAAATGAGGAAGCTACTGGCCCAGGTGTACTAAGGGAGTGGTTTCTTCTGGTATGCCAAGCAATATTCAATCCACAAAATGCACTTTTTGTGGCATGCCCAACTGACAGAAGGAGATTTTTCCCTAATCCTGGTAAGTTTTTCCTGCATTTTTGA 1776 0.4538 MSMIETPAVHHLSGGATDHHRHSSKRKLDEEDDGDFSDLICVRMRKEEAVNSWSSSSGASGTAGSGCSAVAQKPRSHIQFFVRMMSAGNTIVMQAFPEDSVKSIHESIQSMKGIPVFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQIINDMVSLVYRLCCGETVHDSLKTIKGLITSYLNMTPRIDNESASGYFQIFMSSSAPDVLVMLYVSPYAGNKDCAESSVRHFLSSCRNTLSKALHGQCACVVLEFCKLLRRVGTNDPLYLYCRSTFGSLLETAGVSYAGSDNAKGLVLIKDIFPFVFELVNCLLMDLDSSMESHRAVGPLSNDVVDFTAFLVPLRTGIKEQQAVNGSMAQDKSNKDLLHAKEIEYLHCLYMQLLNKIDQCLQKMDQNLAGQEMMEGDNPYPGWSHYLSILKELYQISKLYDGAEEKLWSVLRRHRNVLCLLIVRYAKRTDEHQWILEHRFVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLAESFEYIARAEPESLHVGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPTDRRRFFPNPGKFFLHF 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3237g00127 591 ProSiteProfiles HECT domain profile. 528 584 IPR000569 GO:0004842
Vium3237g00127 591 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 71 166 - -
Vium3237g00127 591 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 78 586 - -
Vium3237g00127 591 Gene3D Hect, E3 ligase catalytic domains 466 590 - -
Vium3237g00127 591 MobiDBLite consensus disorder prediction 1 32 - -
Vium3237g00127 591 PRINTS Ubiquitin signature 110 130 IPR019956 -
Vium3237g00127 591 PRINTS Ubiquitin signature 89 109 IPR019956 -
Vium3237g00127 591 PRINTS Ubiquitin signature 131 152 IPR019956 -
Vium3237g00127 591 SUPERFAMILY Ubiquitin-like 78 165 IPR029071 -
Vium3237g00127 591 Pfam Ubiquitin family 81 152 IPR000626 GO:0005515
Vium3237g00127 591 SUPERFAMILY Hect, E3 ligase catalytic domain 503 584 IPR035983 GO:0004842
Vium3237g00127 591 ProSiteProfiles Ubiquitin domain profile. 78 154 IPR000626 GO:0005515
Vium3237g00127 591 MobiDBLite consensus disorder prediction 14 32 - -
Vium3237g00127 591 Gene3D - 71 167 - -
Vium3237g00127 591 SMART ubq_7 78 150 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3237g00127 Vium-Chr3237 809212 815546 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3237g00127 78 152 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.000 8.64e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3237g00127 - - vum:124833625 1182.55