Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3237g00112 ATGAACTTTGGCAGAGCATCAATGGGAGGCTCATGTTTCCATGCGCTTCGTTTGAGGAGGTTCAAGAGTAAGCCTCTGCCAGAACCCTCTTCTTCTTCGAGGGCACGGTTGGATTCTGACTTGGAGAACATGGAGAGAAGAAGGTTTGACAGCTTGGAATCATGGTCCATGATATTGGACTCTGAGAATGTGGAGACATGGGAAGCATCAAAGGAGGATCAAGAAGAATGGACTGCTGATCTTTCCCAACTTTTCATAGGTAACAAGTTTGCTTCCGGTGCTCACAGTAGGATTTACCGTGGAATTTACAAGCAGAGAGCTGTTGCTGTAAAAATGGTGAGGATTCCCACACAGGACGAGGAGAGAAGAGGCTTGCTCGAACAGCAATTCAAATCAGAAGTTGCTTTACTTTCACGTCTCTTTCACCCTAACATAGTGCAGTTTATTGCAGCTTGTAAAAAACCGCCAGTGTACTGTATCATAACAGAATACATGTCACAAGGAACTCTGAGGATGTATCTAAACAAGAAAGAACCATACTCTCTTTCCACAGAAACCATACTACGGTTAGCTCTTGACATATCAAGGGGCATGGAGTACCTTCATTCGCAAGGTGTGATCCACAGAGACCTAAAGTCAAATAACTTGCTTCTCAACGATGAGATGAGGGTTAAGGTGGCAGACTTTGGAACATCGTGTCTCGAAACACGGTGTCGGGAGACCAAGGGAAACATGGGAACATACCGTTGGATGGCCCCTGAGATGATTAAGGAAAAACCGTACACTCGTAAAGTTGATGTCTACAGCTTTGGAATTGTGCTCTGGGAGCTCACCACTGCTCTACTTCCATTCCAGGGAATGACCCCTGTTCAAGCTGCTTTTGCTGTTGCTGAGAAGAACGAAAGGCCTCCACTTCCTGCTAGTTGCCAACCAGCGCTTGCCCATCTGATAAAACGTTGTTGGTCGGCGAACCCTTCAAAGAGGCCAGATTTCAGTGACATTGTGTGCACTCTGGAGAAGTACGATGAGTGCGTGAAGGAGGGTCTTCCTCTGACTCATCATTCAGGCCTTGTCAGCAAAAACATCATCATCGAACGCTTAAAAGGTTGCGTCTCTATGAGCTCTTCCATACCTGTACAGGCTTGA 1146 0.4625 MNFGRASMGGSCFHALRLRRFKSKPLPEPSSSSRARLDSDLENMERRRFDSLESWSMILDSENVETWEASKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPTQDEERRGLLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETRCRETKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWSANPSKRPDFSDIVCTLEKYDECVKEGLPLTHHSGLVSKNIIIERLKGCVSMSSSIPVQA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3237g00112 381 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 77 340 - -
Vium3237g00112 381 SMART serkin_6 84 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3237g00112 381 PRINTS Tyrosine kinase catalytic domain signature 162 175 IPR001245 GO:0004672|GO:0006468
Vium3237g00112 381 PRINTS Tyrosine kinase catalytic domain signature 246 256 IPR001245 GO:0004672|GO:0006468
Vium3237g00112 381 PRINTS Tyrosine kinase catalytic domain signature 200 218 IPR001245 GO:0004672|GO:0006468
Vium3237g00112 381 PRINTS Tyrosine kinase catalytic domain signature 309 331 IPR001245 GO:0004672|GO:0006468
Vium3237g00112 381 PRINTS Tyrosine kinase catalytic domain signature 265 287 IPR001245 GO:0004672|GO:0006468
Vium3237g00112 381 CDD STKc_MAP3K-like 91 335 - -
Vium3237g00112 381 Gene3D Transferase(Phosphotransferase) domain 1 167 354 - -
Vium3237g00112 381 FunFam Serine/threonine-protein kinase isoform 1 74 166 - -
Vium3237g00112 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Vium3237g00112 381 ProSiteProfiles Protein kinase domain profile. 84 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3237g00112 381 FunFam serine/threonine-protein kinase HT1 167 360 - -
Vium3237g00112 381 Gene3D Phosphorylase Kinase; domain 1 73 166 - -
Vium3237g00112 381 Pfam Protein tyrosine and serine/threonine kinase 86 337 IPR001245 GO:0004672|GO:0006468
Vium3237g00112 381 SUPERFAMILY Protein kinase-like (PK-like) 62 338 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3237g00112 Vium-Chr3237 708697 711651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3237g00112 8 372 MAP Kinase Kinase Kinase AT1G62400 83.467 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium3237g00112 PK_Tyr_Ser-Thr 4.6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3237g00112 - - gmx:100803225 742.651