Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3237g00108 ATGAAGCTCGACAACTCCAACGGCCAGCCGCCCCTCGCTCCCGCCCTTCCGCCGCCGCAGGAGGACCGCACCGACGCCGAAGCCGATGAGATATTCGTTCCGCCCCTCAACTTCGCCATGGTCGACAACGGCATTTTTCGGTCTGGCTTTCCCAATTCTGCTAATTTCGGTTTCCTGAAATCGCTCCGTCTTCGTTCCGTAATATGTTTGTGTCCTGAACCGTATCCAGAAACGACGTCGGAATTTTTGAAGGACAACGGAATAAGACTTTATCAGTTCGGGATCGATGGCTGTAAGGAACCCTTCGTCAACATCCCAAACAATACAATTCGGGAAGCTTTGAAAGTAGCCCTCGATGTTAAAAACCATCCCCTTTTGATTCACTGTAAACGAGGAAAGCACCGCACTGGTTGCCTTGTGGGATGCATAAGAAGATTGCAGAGATGGTGTCTATCATCCGTTTTTGACGAGTACCAAAGGTTTGCAGGTGCCAAAGCAAGGGTGTCAGACCAGAGGTTCATCGAATTATTTGATATATCCTGTTTGAAGCACTACCAACTGCCATTTTCATGCTCAAGGAAATAG 585 0.4889 MKLDNSNGQPPLAPALPPPQEDRTDAEADEIFVPPLNFAMVDNGIFRSGFPNSANFGFLKSLRLRSVICLCPEPYPETTSEFLKDNGIRLYQFGIDGCKEPFVNIPNNTIREALKVALDVKNHPLLIHCKRGKHRTGCLVGCIRRLQRWCLSSVFDEYQRFAGAKARVSDQRFIELFDISCLKHYQLPFSCSRK 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3237g00108 194 ProSitePatterns Tyrosine specific protein phosphatases active site. 127 137 IPR016130 GO:0016311|GO:0016791
Vium3237g00108 194 Gene3D Protein tyrosine phosphatase superfamily 31 181 IPR029021 -
Vium3237g00108 194 PANTHER TYROSINE-PROTEIN PHOSPHATASE 30 187 - -
Vium3237g00108 194 Pfam Tyrosine phosphatase family 33 186 IPR004861 -
Vium3237g00108 194 FunFam probable tyrosine-protein phosphatase At1g05000 31 181 - -
Vium3237g00108 194 ProSiteProfiles Dual specificity protein phosphatase domain profile. 37 191 IPR020422 GO:0006470|GO:0008138
Vium3237g00108 194 PRINTS Plant and fungal dual specificity phosphatase signature 32 49 IPR020428 GO:0016791
Vium3237g00108 194 PRINTS Plant and fungal dual specificity phosphatase signature 69 82 IPR020428 GO:0016791
Vium3237g00108 194 PRINTS Plant and fungal dual specificity phosphatase signature 105 119 IPR020428 GO:0016791
Vium3237g00108 194 PRINTS Plant and fungal dual specificity phosphatase signature 88 102 IPR020428 GO:0016791
Vium3237g00108 194 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 32 179 IPR029021 -
Vium3237g00108 194 CDD PFA-DSP_Siw14 32 178 - -
Vium3237g00108 194 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3237g00108 Vium-Chr3237 686529 690185 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3237g00108 1 194 Protein tyrosine phosphatase (PTP) family AT4G03960 65.979 5.59e-95 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3237g00108 K18045 - gmx:100785520 352.443