Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3237g00107 ATGAAGCTCGACAACTCCAACGGCCAGCCGCCCCTCGCTCCCGCCCTTCCGCCGCCGCAGGAGGACCGCACCGACGCCGAAGCCGATGAGATATTCGTTCCGCCCCTCAACTTCGCCATGGTCGACAACGGCATTTTTCGGTCTGGCTTTCCCAATTCTGCTAATTTCGGTTTCCTGAAATCGCTCCGTCTTCGTTCCGTAATATGTTTGTGTCCTGAACCGTATCCAGAAACGACGTCGGAATTTTTGAAGGACAACGGAATAAGACTTTATCAGTTCGGGATCGATGGCTGTAAGGAACCCTTCGTCAACATCCCAAACAATACAATTCGGGAAGCTTTGAAAGTAGCCCTCGATGTTAAAAACCATCCCCTTTTGATTCACTGTAAACGAGGAAAGGTATGCAGTATGAATTTGTTCTTAAGAGTTTATTTTCTTTACTATTTGGAATTATTATTCTTCAATTGCTCCGTTATTTACCATGATCAGCACCGCACTGGTTGCCTTGTGGGATGCATAAGAAGATTGCAGAGATGGTGTCTATCATCCGTTTTTGACGAGTACCAAAGGTTTGCAGGTGCCAAAGCAAGGGTGTCAGACCAGAGGTTCATCGAATTATTTGATATATCCTGTTTGAAGCACTACCAACTGCCATTTTCATGCTCAAGGAAATAG 675 0.4607 MKLDNSNGQPPLAPALPPPQEDRTDAEADEIFVPPLNFAMVDNGIFRSGFPNSANFGFLKSLRLRSVICLCPEPYPETTSEFLKDNGIRLYQFGIDGCKEPFVNIPNNTIREALKVALDVKNHPLLIHCKRGKVCSMNLFLRVYFLYYLELLFFNCSVIYHDQHRTGCLVGCIRRLQRWCLSSVFDEYQRFAGAKARVSDQRFIELFDISCLKHYQLPFSCSRK 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3237g00107 224 PRINTS Plant and fungal dual specificity phosphatase signature 105 119 IPR020428 GO:0016791
Vium3237g00107 224 PRINTS Plant and fungal dual specificity phosphatase signature 32 49 IPR020428 GO:0016791
Vium3237g00107 224 PRINTS Plant and fungal dual specificity phosphatase signature 69 82 IPR020428 GO:0016791
Vium3237g00107 224 PRINTS Plant and fungal dual specificity phosphatase signature 88 102 IPR020428 GO:0016791
Vium3237g00107 224 Pfam Tyrosine phosphatase family 161 216 IPR004861 -
Vium3237g00107 224 Pfam Tyrosine phosphatase family 33 133 IPR004861 -
Vium3237g00107 224 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 164 209 IPR029021 -
Vium3237g00107 224 Gene3D Protein tyrosine phosphatase superfamily 31 135 IPR029021 -
Vium3237g00107 224 Gene3D Protein tyrosine phosphatase superfamily 154 211 IPR029021 -
Vium3237g00107 224 CDD PFA-DSP_Siw14 32 208 - -
Vium3237g00107 224 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 32 143 IPR029021 -
Vium3237g00107 224 PANTHER TYROSINE-PROTEIN PHOSPHATASE 30 217 - -
Vium3237g00107 224 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3237g00107 Vium-Chr3237 686529 690194 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3237g00107 1 224 Protein tyrosine phosphatase (PTP) family AT4G03960 57.143 5.65e-88 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3237g00107 K18045 - gmx:100785520 336.65