Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3237g00106 ATGAAGCTCGACAACTCCAACGGCCAGCCGCCCCTCGCTCCCGCCCTTCCGCCGCCGCAGGAGGACCGCACCGACGCCGAAGCCGATGAGATATTCGTTCCGCCCCTCAACTTCGCCATGGTCGACAACGGCATTTTTCGATGTTTGTGTCCTGAACCGTATCCAGAAACGACGTCGGAATTTTTGAAGGACAACGGAATAAGACTTTATCAGTTCGGGATCGATGGCTGTAAGGAACCCTTCGTCAACATCCCAAACAATACAATTCGGGAAGCTTTGAAAGTAGCCCTCGATGTTAAAAACCATCCCCTTTTGATTCACTGTAAACGAGGAAAGGTATGCAGTATGAATTTGTTCTTAAGAGTTTATTTTCTTTACTATTTGGAATTATTATTCTTCAATTGCTCCGTTATTTACCATGATCAGCACCGCACTGGTTGCCTTGTGGGATGCATAAGAAGATTGCAGAGATGGTGTCTATCATCCGTTTTTGACGAGTACCAAAGGTTTGCAGGTGCCAAAGCAAGGGTGTCAGACCAGAGGTTCATCGAATTATTTGATATATCCTGTTTGAAGCACTACCAACTGCCATTTTCATGCTCAAGGAAATAG 612 0.4608 MKLDNSNGQPPLAPALPPPQEDRTDAEADEIFVPPLNFAMVDNGIFRCLCPEPYPETTSEFLKDNGIRLYQFGIDGCKEPFVNIPNNTIREALKVALDVKNHPLLIHCKRGKVCSMNLFLRVYFLYYLELLFFNCSVIYHDQHRTGCLVGCIRRLQRWCLSSVFDEYQRFAGAKARVSDQRFIELFDISCLKHYQLPFSCSRK 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3237g00106 203 PANTHER TYROSINE-PROTEIN PHOSPHATASE 48 196 - -
Vium3237g00106 203 Pfam Tyrosine phosphatase family 49 112 IPR004861 -
Vium3237g00106 203 Pfam Tyrosine phosphatase family 140 195 IPR004861 -
Vium3237g00106 203 PRINTS Plant and fungal dual specificity phosphatase signature 84 98 IPR020428 GO:0016791
Vium3237g00106 203 PRINTS Plant and fungal dual specificity phosphatase signature 48 61 IPR020428 GO:0016791
Vium3237g00106 203 PRINTS Plant and fungal dual specificity phosphatase signature 67 81 IPR020428 GO:0016791
Vium3237g00106 203 Gene3D Protein tyrosine phosphatase superfamily 133 190 IPR029021 -
Vium3237g00106 203 Gene3D Protein tyrosine phosphatase superfamily 31 114 IPR029021 -
Vium3237g00106 203 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 143 188 IPR029021 -
Vium3237g00106 203 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 32 122 IPR029021 -
Vium3237g00106 203 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3237g00106 Vium-Chr3237 686529 690227 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3237g00106 1 203 Protein tyrosine phosphatase (PTP) family AT4G03960 51.339 3.50e-73 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3237g00106 K18045 - gmx:100785520 288.5