Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3237g00105 ATGGGGAAATCAGGGGGTAGGAGAAAGAAGGGTGGTTCGAACCCAAACCAGGGTGTGGTTGATAATTCGGGTTCGGGTGTCGGTGTCCCACCGTCTAATGGTGGGTCGGAGTTGTTGGATTCGTCGATATTTTTGAAGAAGGCGAATGAGATGAAAGAGGAAGGGAATAGGAGGTTCCAGAATAAGGACTATGCGGGTGCTCTTGAACAGTACGAGAGTGCTCTTCGTTTAACCCCCAAAACGCACCCTGACAGAGCCGTTTTCCACAGCAACAGGGCGGCGTGTTTGATGCAGATGAAGCCCATAGATTATGAAGCTGTGATTTCTGAGTGCACCATGGCGCTTCAGGTCCAGCCCCGCTTTGTCCGGGCCCTTCTTCGTCGGGCCCGTTCCTTCGAGGCTGTTGGGAAGTATGAAATGGCTGTGCAGGATGTGCAGTTCTTGTTGGGTGCTGATCCTGGTAACCGTGATGCTTTGGAGATCGCCCAGAGATTGAGAACTGCGTTGGGGCCGCGCCAGGAAGCCCAGCAGGACCTCCAAAGTCGACCCTCTCCAGCTGCCCTTGGCGCTTCCGCCGTTCGTGGCGCCCCTATTGCTGGATTGGGGCCATGTTTGCCAGCCCGTCCCGTGGCGAAGAAGGGATCCAATTCAGCAGTTGGATCTGTTGTTTTGCCTAATAATAACAAGCTAGACGGCAAGGCACAACCGGTTTTACCGACTGAAAATGGTTCTGATACCAAGTCCCACTTGCCAAAACTGATGTTGAAGCCTTCAAGTGGTTCTCCAAAGCCATCTTACCCTGGAAAGGATGACCACAAGGAACAGTCATCGGGCATTCATGGGCAGCATTCTCAGGCTGCAATTCTGTGGAGACCGTTGAAGCTTGTTTATGATCATGACATTAGGCTCGCACAGATGCCAGTCAATTGCAACTTTAGAGTGCTGAGGGATGTAGTGAGCAAAAGATTTCCTTCGTCAAGTTCTGTTCTGATCAAATATAAGGATTGCGATGGTGATCTGGTTACTATAACCTCTACTGATGAACTCAGACTGGCAGAGTCTAGTGTTGATAACCATCTCCTCAAAGAACTTGGGGAAGTTAAAAGTGATTCTGTTTCAATGCTGAGACTGCATATTGTTGAAGTTAGTCCAGAGCAGGAGCCACCTTTATTGGAAGAAGAGGAAGAAAAACCAGTTGAGAATGAAGGGGTCAAGGGAGATGAGAGCGGATCTCATTCTTCCCTTGCTGAATCTGCCTCTGAAGTTCCTGACAGTGAGGTTGATAAGATAGGGAAGGAGGCTCCAAAGGAAAAGCCAGGAGCCACTGGAGATACTGAAAGCAAAGAGGTGGAGATGGATGATTGGTTGTTTGAGTTTGCTCAGCTTTTCCGCTCACATGTTGGTATTGATCCAGACGCTCATATTGACTTGCATGAGCTTGGCATGGAGCTTTGTTCTGAGGCACTCGAGGAAACAGTAACTAGTGAGGAGGCCCAGGATCTGTTTGACAAGGCTGCTTCAAAGTTTCAGGAGGTTGCTGCTTTAGCTTACTTCAACTGGGGTAATGTTCACATGTGTGCAGCTAGGAAGCGGATCCCTCTGGATGAGTCTGCAGGGAAAGAGGTAGTGGCTGAGCAGCTTCAAGTGGCTTATGAATGGGTCAAGGAAAAGTATTCGTTGGCAAGAGAGAAGTACGAGGAAGCACTCTCGATCAAATCAGACTTTTATGAGGGACTGTTGGCTCTGGGGCAGCAGCAATTTGAAATGGCTAAACTTCATTGGTCTTTTGCACTTGCTAAGAAGATAGATCTATCTGGCTGGGATTCTAAAGAGACACTTCAACTTTTTGACAGCGCAGAGGAGAAGATGAAAGCTGCAACAGATATGTGGGAGAAACTAGAGGAGCAAAGAGCAAAAGAGCTAAAGGACCCAAATGCAACCAAGAAAGATGAATTATTGAGAAGAAGAAAGAAACAAGGAGGTACCACTGAAGGTGAGTCCTCTACTGTTGGAGGTCAGGGTGATATATCTGCAGAAGAAGCTGCTGAGCAAGCAGCTGTCATGAGATCTCAAATTCACCTCTTCTGGGGTAATATGCTTTTTGAAAGATCCCAAGTTGAATGCAAATTAGGAATGAGTGGTTGGAGAAACCTAGATGTTGCAACTGAATGCTTTAAGCTAGCAGGAGCTTCTGAGGCAGATATTTCAATGGTTCTAAAGAATCATTCCTCAAATGGAGATGCTAAAGATGGAGATGATAAAAAGGTTGAGAACACACGGCAGAACAAGACCATTAAACCAGAGATCAATAAAGCTAATCAAGTATGA 2328 0.4725 MGKSGGRRKKGGSNPNQGVVDNSGSGVGVPPSNGGSELLDSSIFLKKANEMKEEGNRRFQNKDYAGALEQYESALRLTPKTHPDRAVFHSNRAACLMQMKPIDYEAVISECTMALQVQPRFVRALLRRARSFEAVGKYEMAVQDVQFLLGADPGNRDALEIAQRLRTALGPRQEAQQDLQSRPSPAALGASAVRGAPIAGLGPCLPARPVAKKGSNSAVGSVVLPNNNKLDGKAQPVLPTENGSDTKSHLPKLMLKPSSGSPKPSYPGKDDHKEQSSGIHGQHSQAAILWRPLKLVYDHDIRLAQMPVNCNFRVLRDVVSKRFPSSSSVLIKYKDCDGDLVTITSTDELRLAESSVDNHLLKELGEVKSDSVSMLRLHIVEVSPEQEPPLLEEEEEKPVENEGVKGDESGSHSSLAESASEVPDSEVDKIGKEAPKEKPGATGDTESKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAYFNWGNVHMCAARKRIPLDESAGKEVVAEQLQVAYEWVKEKYSLAREKYEEALSIKSDFYEGLLALGQQQFEMAKLHWSFALAKKIDLSGWDSKETLQLFDSAEEKMKAATDMWEKLEEQRAKELKDPNATKKDELLRRRKKQGGTTEGESSTVGGQGDISAEEAAEQAAVMRSQIHLFWGNMLFERSQVECKLGMSGWKXNLDVATECFKLAGASEADISMVLKNHSSNGDAKDGDDKKVENTRQNKTIKPEINKANQV 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3237g00105 776 Coils Coil 616 636 - -
Vium3237g00105 776 Gene3D Tetratricopeptide repeat domain 44 169 IPR011990 GO:0005515
Vium3237g00105 776 MobiDBLite consensus disorder prediction 742 776 - -
Vium3237g00105 776 MobiDBLite consensus disorder prediction 746 765 - -
Vium3237g00105 776 PANTHER PROTEIN CLMP1 1 770 IPR044517 -
Vium3237g00105 776 CDD PB1 293 364 - -
Vium3237g00105 776 Pfam PB1 domain 290 381 IPR000270 GO:0005515
Vium3237g00105 776 MobiDBLite consensus disorder prediction 384 449 - -
Vium3237g00105 776 MobiDBLite consensus disorder prediction 169 191 - -
Vium3237g00105 776 MobiDBLite consensus disorder prediction 1 38 - -
Vium3237g00105 776 MobiDBLite consensus disorder prediction 422 449 - -
Vium3237g00105 776 MobiDBLite consensus disorder prediction 635 662 - -
Vium3237g00105 776 SUPERFAMILY CAD & PB1 domains 285 362 - -
Vium3237g00105 776 ProSiteProfiles PB1 domain profile. 290 382 IPR000270 GO:0005515
Vium3237g00105 776 SMART tpr_5 86 121 IPR019734 GO:0005515
Vium3237g00105 776 SMART tpr_5 542 575 IPR019734 GO:0005515
Vium3237g00105 776 SMART tpr_5 48 81 IPR019734 GO:0005515
Vium3237g00105 776 SMART tpr_5 122 155 IPR019734 GO:0005515
Vium3237g00105 776 ProSiteProfiles TPR repeat profile. 48 81 IPR019734 GO:0005515
Vium3237g00105 776 MobiDBLite consensus disorder prediction 635 682 - -
Vium3237g00105 776 MobiDBLite consensus disorder prediction 217 281 - -
Vium3237g00105 776 SMART PB1_new 290 382 IPR000270 GO:0005515
Vium3237g00105 776 Gene3D - 292 364 - -
Vium3237g00105 776 SUPERFAMILY TPR-like 467 592 IPR011990 GO:0005515
Vium3237g00105 776 SUPERFAMILY TPR-like 45 179 IPR011990 GO:0005515
Vium3237g00105 776 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3237g00105 Vium-Chr3237 682580 685798 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3237g00105 45 169 Calmodulin-binding Proteins AT3G25230 27.941 1.42e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3237g00105 K26538 - gmx:100786963 1296.95