Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium3237g00103 | ATGAGTCAACTCGGTCTCATTTTACAAGAATCGCTCCGCACAGAGAGAGAAGCAAGAACCATCCTGGGTCTGTTAACGGACCAAATGGACGCCGCCGATGGAGCCCAACGGAGGAGACGCACGCTCAAAGAACGCCTCAGATTCTCCGGAATGGGCTGCTGCGGGGCCACCTGGGTTTTCCGACCAACCCTAAGGGACGAAGGTGGACCACCACCACCACAACCACAACTAGTACAACAAACAAACCCGGGTCAAGATTCGAACCAGAACAGGCCCGAATGCGTTGGTCCAAGAGGGTCGGGTTCGGGCATGAATCTCGCGGCGGCGCTGGCGGCGGAGAGGCAGCTGCGAGAATCTGAAGAGGGAAGGATGTCGTTGATGCGGCTGTTGGAGGAAAAGGAGGGTGGTGAGGATGCGGCTGTGGATAATGATTCGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGGGCGGCATTTATCCCGTGTGGACACACTTTCTGTAGAGTGTGTTCTAAAGAAATGTGGTTGAACAGAGGTACTTGTCCCCTTTGTAACCGTTCCGTTCTCGACATTCTCCACATCTTCTGA | 588 | 0.5493 | MSQLGLILQESLRTEREARTILGLLTDQMDAADGAQRRRRTLKERLRFSGMGCCGATWVFRPTLRDEGGPPPPQPQLVQQTNPGQDSNQNRPECVGPRGSGSGMNLAAALAAERQLRESEEGRMSLMRLLEEKEGGEDAAVDNDSVCCVCMGRKKGAAFIPCGHTFCRVCSKEMWLNRGTCPLCNRSVLDILHIF | 195 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium3237g00103 | 195 | SMART | ring_2 | 147 | 184 | IPR001841 | - | |
Vium3237g00103 | 195 | MobiDBLite | consensus disorder prediction | 79 | 95 | - | - | |
Vium3237g00103 | 195 | SUPERFAMILY | RING/U-box | 141 | 191 | - | - | |
Vium3237g00103 | 195 | ProSiteProfiles | Zinc finger RING-type profile. | 147 | 185 | IPR001841 | - | |
Vium3237g00103 | 195 | PANTHER | OS01G0917900 PROTEIN | 5 | 195 | - | - | |
Vium3237g00103 | 195 | Pfam | Zinc finger, C3HC4 type (RING finger) | 144 | 189 | - | - | |
Vium3237g00103 | 195 | CDD | RING-HC | 147 | 184 | - | - | |
Vium3237g00103 | 195 | MobiDBLite | consensus disorder prediction | 62 | 98 | - | - | |
Vium3237g00103 | 195 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 138 | 192 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium3237g00103 | Vium-Chr3237 | 666595 | 667408 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium3237g00103 | 21 | 195 | C3H Transcription Factor Family | AT4G22250 | 50.000 | 3.15e-52 | 165 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium3237g00103 | - | - | pvu:PHAVU_003G082200g | 325.094 |