Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3237g00103 ATGAGTCAACTCGGTCTCATTTTACAAGAATCGCTCCGCACAGAGAGAGAAGCAAGAACCATCCTGGGTCTGTTAACGGACCAAATGGACGCCGCCGATGGAGCCCAACGGAGGAGACGCACGCTCAAAGAACGCCTCAGATTCTCCGGAATGGGCTGCTGCGGGGCCACCTGGGTTTTCCGACCAACCCTAAGGGACGAAGGTGGACCACCACCACCACAACCACAACTAGTACAACAAACAAACCCGGGTCAAGATTCGAACCAGAACAGGCCCGAATGCGTTGGTCCAAGAGGGTCGGGTTCGGGCATGAATCTCGCGGCGGCGCTGGCGGCGGAGAGGCAGCTGCGAGAATCTGAAGAGGGAAGGATGTCGTTGATGCGGCTGTTGGAGGAAAAGGAGGGTGGTGAGGATGCGGCTGTGGATAATGATTCGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGGGCGGCATTTATCCCGTGTGGACACACTTTCTGTAGAGTGTGTTCTAAAGAAATGTGGTTGAACAGAGGTACTTGTCCCCTTTGTAACCGTTCCGTTCTCGACATTCTCCACATCTTCTGA 588 0.5493 MSQLGLILQESLRTEREARTILGLLTDQMDAADGAQRRRRTLKERLRFSGMGCCGATWVFRPTLRDEGGPPPPQPQLVQQTNPGQDSNQNRPECVGPRGSGSGMNLAAALAAERQLRESEEGRMSLMRLLEEKEGGEDAAVDNDSVCCVCMGRKKGAAFIPCGHTFCRVCSKEMWLNRGTCPLCNRSVLDILHIF 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3237g00103 195 SMART ring_2 147 184 IPR001841 -
Vium3237g00103 195 MobiDBLite consensus disorder prediction 79 95 - -
Vium3237g00103 195 SUPERFAMILY RING/U-box 141 191 - -
Vium3237g00103 195 ProSiteProfiles Zinc finger RING-type profile. 147 185 IPR001841 -
Vium3237g00103 195 PANTHER OS01G0917900 PROTEIN 5 195 - -
Vium3237g00103 195 Pfam Zinc finger, C3HC4 type (RING finger) 144 189 - -
Vium3237g00103 195 CDD RING-HC 147 184 - -
Vium3237g00103 195 MobiDBLite consensus disorder prediction 62 98 - -
Vium3237g00103 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 192 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3237g00103 Vium-Chr3237 666595 667408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3237g00103 21 195 C3H Transcription Factor Family AT4G22250 50.000 3.15e-52 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3237g00103 - - pvu:PHAVU_003G082200g 325.094