Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3237g00098 ATGGAGGGTGGTTCTAACGAGGCTTCTAGTGTGATGGGTTTTGGAGAGAATACAAGTAGTAGTGGGGTTTGTCCAATGATGATGATGCCTTTAGTGACTTCTCATCATGGTGGACATCGTCCATTAAATCCTAATCTTAATAATCCCAATCGTAATCTTAATGAAAACACAAACACAAACACTCTCTTCGTTCCCATGCCTAGTACTAATAACAATCACCACCCAAACCGCAATAGCATCCACGACATTAACCACAACACCAACACCTCTGAGTTAGGGTATTTCATGGAGATCCACAACCGCAACACGAACAACAACAACGATGGAAGTTCCTCCTCTTCTTCTTCTTCCGCTGTGAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCCTACGTCAATTGTCAAAAGGTTGGGGCGCCACCTGAAGTGGTGGCAAGGCTAGAAGAAGCATGTGCATCTTCTGCAGTGACTATGGCAGGTGGAACTGCCAGAATCGGTGAGGATCCGGCGCTGGACCAGTTCATGGAGGCTTACTGTGAGATGCTGATCAAGTACGAGCAAGAGCTCTCCAAACCCTTCAAGGACGCCATGCTCTTCCTTCAAAGGATCGAGTGCCAGTTCAAATCTCTTACTATTTCTTCTTCCGACACTGCTTGTAATGAAGGTGGTGATAGGAATGGATCGTCTGAAGAAATTGATGTACAGAACAACATAATAGATCCACAGGCAGAGGACCAAGAACTGAAAGGTCAACTGTTGCGTAAGTATCGGGGATACCTAGGTAGTTTGAAGCAGGAATTCACAAAGAAGAGAAAAAAGGGGAAGCTGCCGAAAGAAGCAAGGCAACAATTACTGGATTGGTGGAGCAGACACTACAAATGGCCTTACCCATCTGAATCTCAGAAGCTGGCGCTTGCAGAATCAACAGGGCTGGATCAGAAGCAAATTAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCGGAGGACATGCAATTCGTGGTGGTTGATCCAAACCATCCACACTACTACATGGAAAATGTTCTTGCCAATCCCTTTCCCGATCTCTCCCACACAATGCTCTAG 1110 0.4604 MEGGSNEASSVMGFGENTSSSGVCPMMMMPLVTSHHGGHRPLNPNLNNPNRNLNENTNTNTLFVPMPSTNNNHHPNRNSIHDINHNTNTSELGYFMEIHNRNTNNNNDGSSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASSAVTMAGGTARIGEDPALDQFMEAYCEMLIKYEQELSKPFKDAMLFLQRIECQFKSLTISSSDTACNEGGDRNGSSEEIDVQNNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPNHPHYYMENVLANPFPDLSHTML 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3237g00098 369 Pfam Homeobox KN domain 292 331 IPR008422 GO:0003677|GO:0006355
Vium3237g00098 369 MobiDBLite consensus disorder prediction 1 20 - -
Vium3237g00098 369 SMART ELK_2 252 273 IPR005539 GO:0003677
Vium3237g00098 369 SMART HOX_1 274 339 IPR001356 GO:0003677
Vium3237g00098 369 FunFam Homeobox protein knotted-1-like 2 277 339 - -
Vium3237g00098 369 CDD homeodomain 284 336 IPR001356 GO:0003677
Vium3237g00098 369 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 73 341 - -
Vium3237g00098 369 SMART KNOX1_2 117 161 IPR005540 GO:0003677|GO:0005634
Vium3237g00098 369 SMART KNOX2_2 166 217 IPR005541 GO:0003677|GO:0005634
Vium3237g00098 369 ProSiteProfiles ELK domain profile. 252 272 IPR005539 GO:0003677
Vium3237g00098 369 Pfam KNOX1 domain 118 158 IPR005540 GO:0003677|GO:0005634
Vium3237g00098 369 Pfam ELK domain 252 272 IPR005539 GO:0003677
Vium3237g00098 369 SUPERFAMILY Homeodomain-like 274 349 IPR009057 -
Vium3237g00098 369 Pfam KNOX2 domain 170 216 IPR005541 GO:0003677|GO:0005634
Vium3237g00098 369 ProSitePatterns 'Homeobox' domain signature. 310 333 IPR017970 GO:0000981|GO:0006355
Vium3237g00098 369 Gene3D - 277 339 - -
Vium3237g00098 369 ProSiteProfiles 'Homeobox' domain profile. 272 335 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3237g00098 Vium-Chr3237 622438 627367 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3237g00098 95 369 Homeobox Transcription Factor Family AT1G62360 75.610 6.44e-131 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vium3237g00098 KNOX2 7.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3237g00098 - - gmx:100127401 589.341