Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3237g00097 ATGGAGGGTGGTTCTAACGAGGCTTCTAGTGTGATGGGTTTTGGAGAGAATACAAGTAGTAGTGGGGTTTGTCCAATGATGATGATGCCTTTAGTGACTTCTCATCATGGTGGACATCGTCCATTAAATCCTAATCTTAATAATCCCAATCGTAATCTTAATGAAAACACAAACACAAACACTCTCTTCGTTCCCATGCCTAGTACTAATAACAATCACCACCCAAACCGCAATAGCATCCACGACATTAACCACAACACCAACACCTCTGAGTTAGGGTATTTCATGGAGATCCACAACCGCAACACGAACAACAACAACGATGGAAGTTCCTCCTCTTCTTCTTCTTCCGCTGTGAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCCTACGTCAATTGTCAAAAGCAGGTTGGGGCGCCACCTGAAGTGGTGGCAAGGCTAGAAGAAGCATGTGCATCTTCTGCAGTGACTATGGCAGGTGGAACTGCCAGAATCGGTGAGGATCCGGCGCTGGACCAGTTCATGGAGGCTTACTGTGAGATGCTGATCAAGTACGAGCAAGAGCTCTCCAAACCCTTCAAGGACGCCATGCTCTTCCTTCAAAGGATCGAGTGCCAGTTCAAATCTCTTACTATTTCTTCTTCCGACACTGCTTGTAATGAAGGTGGTGATAGGAATGGATCGTCTGAAGAAATTGATGTACAGAACAACATAATAGATCCACAGGCAGAGGACCAAGAACTGAAAGGTCAACTGTTGCGTAAGTATCGGGGATACCTAGGTAGTTTGAAGCAGGAATTCACAAAGAAGAGAAAAAAGGGGAAGCTGCCGAAAGAAGCAAGGCAACAATTACTGGATTGGTGGAGCAGACACTACAAATGGCCTTACCCATCTGAATCTCAGAAGCTGGCGCTTGCAGAATCAACAGGGCTGGATCAGAAGCAAATTAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCGGAGGACATGCAATTCGTGGTGGTTGATCCAAACCATCCACACTACTACATGGAAAATGTTCTTGCCAATCCCTTTCCCGATCTCTCCCACACAATGCTCTAG 1113 0.4609 MEGGSNEASSVMGFGENTSSSGVCPMMMMPLVTSHHGGHRPLNPNLNNPNRNLNENTNTNTLFVPMPSTNNNHHPNRNSIHDINHNTNTSELGYFMEIHNRNTNNNNDGSSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKQVGAPPEVVARLEEACASSAVTMAGGTARIGEDPALDQFMEAYCEMLIKYEQELSKPFKDAMLFLQRIECQFKSLTISSSDTACNEGGDRNGSSEEIDVQNNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPNHPHYYMENVLANPFPDLSHTML 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3237g00097 370 SMART ELK_2 253 274 IPR005539 GO:0003677
Vium3237g00097 370 MobiDBLite consensus disorder prediction 1 20 - -
Vium3237g00097 370 FunFam Homeobox protein knotted-1-like 2 278 340 - -
Vium3237g00097 370 SUPERFAMILY Homeodomain-like 275 350 IPR009057 -
Vium3237g00097 370 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 73 342 - -
Vium3237g00097 370 Pfam KNOX2 domain 171 217 IPR005541 GO:0003677|GO:0005634
Vium3237g00097 370 ProSitePatterns 'Homeobox' domain signature. 311 334 IPR017970 GO:0000981|GO:0006355
Vium3237g00097 370 Gene3D - 278 340 - -
Vium3237g00097 370 SMART KNOX2_2 167 218 IPR005541 GO:0003677|GO:0005634
Vium3237g00097 370 SMART KNOX1_2 117 162 IPR005540 GO:0003677|GO:0005634
Vium3237g00097 370 ProSiteProfiles 'Homeobox' domain profile. 273 336 IPR001356 GO:0003677
Vium3237g00097 370 CDD homeodomain 285 337 IPR001356 GO:0003677
Vium3237g00097 370 Pfam ELK domain 253 273 IPR005539 GO:0003677
Vium3237g00097 370 SMART HOX_1 275 340 IPR001356 GO:0003677
Vium3237g00097 370 Pfam KNOX1 domain 118 159 IPR005540 GO:0003677|GO:0005634
Vium3237g00097 370 ProSiteProfiles ELK domain profile. 253 273 IPR005539 GO:0003677
Vium3237g00097 370 Pfam Homeobox KN domain 293 332 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3237g00097 Vium-Chr3237 622437 627367 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3237g00097 95 370 Homeobox Transcription Factor Family AT1G62360 75.347 3.73e-129 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vium3237g00097 KNOX2 7.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3237g00097 - - gmx:100127401 584.719