Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3237g00096 ATGGCGAAAGTGATTGTTGTTTCCGTAGGTTTACCATTGATAGCAGTGATTCTGATCTCCATGTTCATGGCTGCTATAACTTGCTTGAAGGAAGAAGAGCGTTCCATATATTTGGTCTTAATGGAAGGAGATGCACTTGCTTTTACTCAACAACATTCATCAACAATGCAATCCAACAGGGAAGCTTCAAAGACACATGCAAAGCACTTAATATCATCATCTCACGATCTATTTCTGCAAACAACGTTGGATACAGGAAGCTACAACAAACTCCACAGTTATAAACACATCATCAATGGTTTTTCTGTCCACACAACCCCTTCCCAGGCTGAAAGACTAAGAAGTAAACCGGGAGTTAAGTTGGTAGAGAAAGACAGAGGAGTGAAAAAGATGACAACATACACACCTGAATTTCTAAGTTTACCAAATGGAATATGGGCGCAGGAAGGAGGAGAAACAAATGCAGGTGAAGGAGTTGTGATTGGTTTTGTGGATAGTGGCATCAACCCTTTTCATCCCAGCTTTGCTTACGATCCCATGCTACCTTTCAAATCAAACCTCTCTCGTTTTGAGGGTGCCTGCATGATGGGTCCTCTCTTCCCTCCTACTTCCTGCAATGGAAAGATAGTAGCCGCCAGGTATTTCTCTGCTGGGGCTGAAGCTGCTGCTACACTCGATCCTTCCAAGGATTTTCTTTCACCCTATGATGCAGATGGACATGGCAGTCATGTGGCATCTATTGCTGCTGGAAATGCTGGTGTTCCTGTTGTAGTCAACAGTTTTTGCTACGGGAAAGCTAGTGGAATAGCACCACGTGCAAGGATTGCTGTTTATAAGGCTATGTATCCATCCGTGGCAACTCTAGCAGATGTTATTGCTGCGATCGATCACGCTGTTCTGGATGGAGTGGATATCTTATCGCTATCTGTAGGACCAAACGGACCACCAGAACACACGTTAACATTCTTAAACATGTTTGACATTTCTTTGTTGTTTGCACGAAAAGCAGGAGTTCTCGTGGTGCAAGCTGCAGGGAACAACGGTCCCGCATCTTCAAGTGTAGTGTCATTCAGTCCTTGGAGTGTAACTGTCGCCGCTAGCACCACAAACAGAAGGTACCCTTCTTCACTTGTACTTGGAAATGGCGCAGTACTTAATGGCGTGGGACTATCAGGACCAAGTTTTGGAAATGGATCAGTTTGGCATAAGCTTGTTTTAGCTAAGGATGCGGTCAAAATGAGTGGAACAAGACCAAAGACTGAGTACATTGAGGAGTGCCAACATCCAGATGTTTTGGACCCTCATATAGTGTTGGGAAGTATCATTATCTGCACATTCTCAGGTGGGTTCTATAATGGCACCTCAACTCTTGCTGGTATTATTGGCACCGTGAAGGCTCTGGGAATGGAGGGCTTTGTTTTAGTTGCGAACCCAAGCTATGGTGATTATATTGCAGAGCCAATGCCTTTTGCCTTTTCTGGTATTTTGATCCCTCGTGTGGAGGATGCCAAGGCTATATTAAAGTACTATGAAGAAAAAACAAAGAGGAACAAGAAAGGAAATGGCAGAGAGTTTGGTGCTTTGGCAGCTGTGGGAGAAGGAAGACTTGCCTCTTTCACAGGAAGATCACCGATAGTCAGTAGATTTTCTTCAAGGGGTCCAGATATCATTGACAATAAAAAAAATGTTGCAGATGTTCTTAAACCTGATATTCTTGCTCCAGGACACCAAATCTGGGCGGCCTGGGCCCCCATGAGTGCCTCAGAACCTTTCCTCAGAGGGAACAGTTTTGCATTGTTATCTGGTACCAGCATGTCCACACCTCATGTGGCTGGAATAGCAGCACTGATGAAGCAACACAATCCATCATGGACTCCATCCATGATAGCTTCTGCGATCTCTACAACAAGCTCAAAGTATGACCATCTTGGACAGCCTATAATGGCAGAAGGCTATGAGGTCAACACCTTGCTACCCGCCACTCCTTTTGATTACGGCTCAGGCTTTGTCAACCCCAGTCGTGCCGTTGATCCTGGTTTGGTACTTTCATCAGATTATGCAGACTTCATCAGCTTCCTGTGCTCTTTGCCGGACATAGACACGGATGCAGTCGTTGCAGCTACTGGAGAGCAATGCAATCACCCATTTGCCTATCCTTTCAGTCTAAACCTTCCTTCGGTTACAGTATCTGCGCTGAGAGGATCAGTTTCTGTCCGAAGAACTTTCACGAACGTGGGGAACACCACAGAGACGTACTTGGCCACTGTTGGTCCCCCAAATGGAACTGACATCTGCCTGTATCCAACTTGGTTTACCTTAACTCCGCAAGGAACGCAAGATTTGGATATACATATCAGTGTCGTCCAACCAATGCAGAATTTTACCTTTGGTGAAATTGTTCTCACAGGAAATTTAAACCACATTGTACGAATAACATTGTCAGTGTTCGCGATTTCAGTGTAA 2463 0.4486 MAKVIVVSVGLPLIAVILISMFMAAITCLKEEERSIYLVLMEGDALAFTQQHSSTMQSNREASKTHAKHLISSSHDLFLQTTLDTGSYNKLHSYKHIINGFSVHTTPSQAERLRSKPGVKLVEKDRGVKKMTTYTPEFLSLPNGIWAQEGGETNAGEGVVIGFVDSGINPFHPSFAYDPMLPFKSNLSRFEGACMMGPLFPPTSCNGKIVAARYFSAGAEAAATLDPSKDFLSPYDADGHGSHVASIAAGNAGVPVVVNSFCYGKASGIAPRARIAVYKAMYPSVATLADVIAAIDHAVLDGVDILSLSVGPNGPPEHTLTFLNMFDISLLFARKAGVLVVQAAGNNGPASSSVVSFSPWSVTVAASTTNRRYPSSLVLGNGAVLNGVGLSGPSFGNGSVWHKLVLAKDAVKMSGTRPKTEYIEECQHPDVLDPHIVLGSIIICTFSGGFYNGTSTLAGIIGTVKALGMEGFVLVANPSYGDYIAEPMPFAFSGILIPRVEDAKAILKYYEEKTKRNKKGNGREFGALAAVGEGRLASFTGRSPIVSRFSSRGPDIIDNKKNVADVLKPDILAPGHQIWAAWAPMSASEPFLRGNSFALLSGTSMSTPHVAGIAALMKQHNPSWTPSMIASAISTTSSKYDHLGQPIMAEGYEVNTLLPATPFDYGSGFVNPSRAVDPGLVLSSDYADFISFLCSLPDIDTDAVVAATGEQCNHPFAYPFSLNLPSVTVSALRGSVSVRRTFTNVGNTTETYLATVGPPNGTDICLYPTWFTLTPQGTQDLDIHISVVQPMQNFTFGEIVLTGNLNHIVRITLSVFAISV 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3237g00096 820 Pfam Fibronectin type-III domain 722 815 IPR041469 -
Vium3237g00096 820 ProSitePatterns Serine proteases, subtilase family, serine active site. 602 612 IPR023828 -
Vium3237g00096 820 ProSiteProfiles Serine proteases, subtilase domain profile. 136 676 - -
Vium3237g00096 820 Gene3D Peptidase S8/S53 domain 158 689 IPR036852 GO:0004252|GO:0006508
Vium3237g00096 820 PRINTS Subtilisin serine protease family (S8) signature 601 617 IPR015500 -
Vium3237g00096 820 PRINTS Subtilisin serine protease family (S8) signature 156 175 IPR015500 -
Vium3237g00096 820 PRINTS Subtilisin serine protease family (S8) signature 236 249 IPR015500 -
Vium3237g00096 820 ProSitePatterns Serine proteases, subtilase family, histidine active site. 240 250 IPR022398 -
Vium3237g00096 820 Gene3D - 693 817 - -
Vium3237g00096 820 Gene3D - 370 539 - -
Vium3237g00096 820 Pfam Subtilase family 156 640 IPR000209 GO:0006508|GO:0008236
Vium3237g00096 820 SUPERFAMILY Subtilisin-like 131 680 IPR036852 GO:0004252|GO:0006508
Vium3237g00096 820 Pfam Peptidase inhibitor I9 62 129 IPR010259 -
Vium3237g00096 820 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 161 172 IPR023827 -
Vium3237g00096 820 SUPERFAMILY Protease propeptides/inhibitors 88 128 - -
Vium3237g00096 820 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 24 130 IPR037045 -
Vium3237g00096 820 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 80 813 IPR045051 -
Vium3237g00096 820 CDD PA_subtilisin_like 376 510 - -
Vium3237g00096 820 CDD Peptidases_S8_3 128 638 IPR034197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3237g00096 Vium-Chr3237 609982 615084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3237g00096 13 818 Subtilisin-like Serine Gene Family AT1G62340 57.543 0.0 937
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3237g00096 - - gmx:100798915 1265.75