Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3237g00090 ATGGATGTTGTTGTCCCAAGAAGAGAACGCTCAAAAACTTCGCAAGCTGAGGATAAGCTGGCATTGTCCAGATGCTCGAAAGTTTACAGAAAATCGAAGAGAAAAGCTGAAGAAATGTCTGAAAATGGTGATAAGAAATCCGAACTGAAAGGGAAAGAAGGTGAGATGTGTTTAAAGAAGAATTGTGCAGTAAGGGTGACTAAAAAGAAGAGAAAGGTTCGAGAAAGCTATATGTTTGATAATATAAAACCAAAGTTAGATGCCAAAGAAGATTCCTGTTTACCGAGGACAAGAAAACTACCATGCAAGAGAAGAGATGAGAAACAAAAGCTTACTGTCTCAAACAATAAAAGGAAATATAAAGATGATTTCTCGAGTGATGATTTAGAAGATGAAGAAATGCTTGTTATCTTAAGATCAAAGACCAGGAGCAGATTGAGAAGAATGAATAATGTGAAGGATGTTGAACAAAAGCCCCGAATCTGTCATCAATGCATGAAAAAGGAGAGAACACTTTTTGTGCCTTGTACTAAATGCCCGAAAATGTACTGTATGCAGTGTTTGGATAAATGGTACTCTGATATGACAATAGAAGAAATTGCTGCAAGTTGCCCGTTTTGCCAGAAAAACTGCAATTGCAATGTTTGCTTGCGCGCAAGAGGAATGATTAAGACATCTAACAGGGACATAACTGATTATGAAAAAGCTCAGTATCTGCATTATATGATCAACTTACTCCTACCATTTTTGAAACAAATTTGTCATGAACAAAGTCAAGAGGAGCAGATTGAAGCTAAAATACTAGGAAAACCTTCTTTTGAGAAGGAAATACCTCGAAGTCTTTGTGGCAACGATGAACGTGTCTATTGTGATCATTGTGCTACTTCAATTATTGATCTTCATAGAAGCTGCCCCAGATGTTCCTATGAACTCTGCCTCAGTTGTTGCCAAGAAATACGTGATGGAAGAATTACACCCCGGGTGGAGCAGAAGTTCTCATATGTGAATAGGGGCTATGATTATATGCATGGTGGAGACCCTCTACCTGTGTCTAATGATTTCAGGACATCAGAATGTCAAACCAAGCTATCTAATGTGTGGAATGCTAAGAGTGATGGAATCATCCGATGTGCACCAAAGGAGTTGGGGGGTTGTGGCAGTGCTGCATTGGAGCTGAGACGTGTCCTACCAAGTGGCTGGATATCTGAATTGGAAATCAAAGCTCGCAGGACGCTGAAAATTTGGGAAGATGAAAACACAACTCGTAAGCTAGAAAAAGCAGCATCAAGCTACACCTCTTTGAGAAAGGAAGCTATGAAAGAAGACATAAATGGCAATAATATGTACTGTTCAGAGTCAAGTAGCATTCAAAAGGGAGAGTTGTTGCTTTTCCAAAAGCATTGGGCTAATGGCGAACCAATTATAGTTCGTGATGCCGTTAAACTGGGGACCGGTCTGAGTTGGAAGCCGATGGTAATGTGGCGAGCATTGTGTGAAAATAGGGCTTCAGAGGTCAGTTCAAAAATGTCAGAAGTGAAAGCCATTGATTGCCTGGCTAATTGTGAGGTAGAAATCGATACTCGCACATTTTTCAAAGGTTATATCGAGGGAAGAACATACAGAAATCTCTGGCCAGAGATGCTGAAGCTAAAAGACTGGCCCCCCTCTGATAAATTTGAAGATCTTTTGCCCCGCCACTGTGATGAGTTTATTCGCTCATTGCCATTCCAAGAGTACAGTGATCCTCGGAGCGGAATTCTCAATCTTGCTGCGAAGTTGCCAGCCCATGTCATAAAACCTGACATGGGTCCGAAAACTTATATTGCCTATGGGATCAAAGAAGAGCTTGGTAGAGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTCAATATTTTAACGCATACAGCAGAGGTGATGTTAACTGATGAGCAGCACTTAATTATTTCAAAGTTGAAAGAAGCACACAAGGTACAAGATGAGAGAGAGCAGCGTGCTGAAGAAAGGGTTACCAACAGCCTGAACTGCCGAACTTTCAAAGAGAACAAAGTACGGATAGAAAACAAGGTAGTTTTAGAATCCAATGACATAGAGAAGCGTCCTATTGAAATTAATGGAAGGATATTTACAAAGGATGTACATGAAGAGGTCGCTTCTGCTATAGAGAATGAATCAACGGAAACAGGCAGTGCTCTATGGGATATCTTTCGAAGAGAAGATTCTAAGAAGTTAGAATCATATCTCAGGAAACACTCAAAAGAATTTAGACATACTTATTGTTCTCCAGTTGAACAGGTTGAACATCCAATTCATGACCAATGTTTCTATTTGACATGGGAGCACAAGAAGAAGCTGAAGGAGGAGTTCGGTGTAGAACCGTGGACTTTTGAGCAAAAACTTGGGGAGGCTGTCTTTATTCCTGCTGGATGCCCACATCAAGTCAGGAATCTCAAGTCATGCACAAAAGTTGCGGTAGACTTTGTGTCTCCGGAAAACATCCATGAGTGTCTGCGTTTAACTAATGAGTTTCGCCAGCTTCCCAAGAACCACAAGGCTAGAGAAGATAAGCTTGAGATAAAGAAGATGATAGTTTATGCCATTGATGAAGCTGTCACAGACCTTAAAGCTTTACTAAAGTTTTCATGA 2655 0.4056 MDVVVPRRERSKTSQAEDKLALSRCSKVYRKSKRKAEEMSENGDKKSELKGKEGEMCLKKNCAVRVTKKKRKVRESYMFDNIKPKLDAKEDSCLPRTRKLPCKRRDEKQKLTVSNNKRKYKDDFSSDDLEDEEMLVILRSKTRSRLRRMNNVKDVEQKPRICHQCMKKERTLFVPCTKCPKMYCMQCLDKWYSDMTIEEIAASCPFCQKNCNCNVCLRARGMIKTSNRDITDYEKAQYLHYMINLLLPFLKQICHEQSQEEQIEAKILGKPSFEKEIPRSLCGNDERVYCDHCATSIIDLHRSCPRCSYELCLSCCQEIRDGRITPRVEQKFSYVNRGYDYMHGGDPLPVSNDFRTSECQTKLSNVWNAKSDGIIRCAPKELGGCGSAALELRRVLPSGWISELEIKARRTLKIWEDENTTRKLEKAASSYTSLRKEAMKEDINGNNMYCSESSSIQKGELLLFQKHWANGEPIIVRDAVKLGTGLSWKPMVMWRALCENRASEVSSKMSEVKAIDCLANCEVEIDTRTFFKGYIEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRSLPFQEYSDPRSGILNLAAKLPAHVIKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVMLTDEQHLIISKLKEAHKVQDEREQRAEERVTNSLNCRTFKENKVRIENKVVLESNDIEKRPIEINGRIFTKDVHEEVASAIENESTETGSALWDIFRREDSKKLESYLRKHSKEFRHTYCSPVEQVEHPIHDQCFYLTWEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENIHECLRLTNEFRQLPKNHKAREDKLEIKKMIVYAIDEAVTDLKALLKFS 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3237g00090 884 Coils Coil 652 672 - -
Vium3237g00090 884 SMART cupin_9 563 847 IPR003347 -
Vium3237g00090 884 SUPERFAMILY Clavaminate synthase-like 463 878 - -
Vium3237g00090 884 ProSiteProfiles JmjC domain profile. 582 847 IPR003347 -
Vium3237g00090 884 MobiDBLite consensus disorder prediction 31 51 - -
Vium3237g00090 884 CDD cupin_RmlC-like 771 831 - -
Vium3237g00090 884 Pfam JmjC domain, hydroxylase 727 830 IPR003347 -
Vium3237g00090 884 ProSiteProfiles Zinc finger RING-type profile. 162 208 IPR001841 -
Vium3237g00090 884 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 158 227 IPR018866 -
Vium3237g00090 884 Gene3D Cupin 443 856 - -
Vium3237g00090 884 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 31 880 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3237g00090 Vium-Chr3237 558930 564259 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium3237g00090 JmjC 5e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3237g00090 K15601 K21989 gmx:100797860 1338.17