Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3237g00085 ATGGCCACGTCAACCACACTCCTCCTACTTTCATGCTTCATGGTACACCTTGCTTCAACCTTTGTTTCTGCTCATTCAACAGGGAACAACTACTACAACAACACTCCCCAACCTCTCTCAAAGTACATTCCTAAGAAACCATTGCTCAATGTGATAGACTCTTGCTGGAGGGCCAGACCAAATTGGAGCTCAAATCGCCAAGCCTTGGCTGATTGTGCAATTGGCTTTGGCAAAGAGGCCACAGGAGGCAAGTATGGTGCAGTATACCATGTCTCCGATCCCTCCGATGACCCTGCAAACCCAAAACCAGGCACACTCCGCTATGGTGCAATCCAAAATGACCCACTCTGGATCATTTTCGACAAAGACATGGTCATTACACTAAAAAATGAGCTTATTATGAGTAGCAACAAAACCATTGATGGAAGAGGAGCAAAAGTGGAGATTGCTGATGGGCCTTGTATTACAATATCAAATGTTAGCCATGTTATCATACATGGCATTAGCATCCATGATTGCGAACCAGCCAAGCCTGGCCTGAACACTCCTGACCATGTTGGCCATCGTTTAGGCTCCGATGGAGATGCCATCAGCATAATCGATTCCACCAATGTTTGGATCGATCATTGTTTTTTGGCTCGTTCCACCGATGGCCTAATCGATGTTATTCGTGCCTCAACCGCCATTACCATCTCTAACAATTACTTTACTCAGCACGACAAAGTTATGTTGCTAGGACACAGTGACCAATTCACAAAGGATAAAATAATGAAAGTGACAATAGCCTTCAACCAGTTTGCTAGTGGCCTAACTGAGAGGATGCCAAGGGTAAGGTTTGGTTATGCCCATGTGGTGAACAACAAATATGATGAGTGGAAAATGTATGCTATAGGCGGTAGTGCTAACCCAACCATATTAAGTGAAGGGAATTTTTATGTAGCACCGAATGACCCAAATGCAAAACAGGTTACCAAGAGGGAAGTGAAGGAGAACTGGAAAAGTTGGAAATGGAGGTCTTCCAAGGACTTGTTTTTCAATGATGCTTATTTTGTACCCTCTGGAGTTGGAAGCTGTGCTCCAAATTACTCACCAACTCAATATTTTGCTGCTGCTCCAGCATACATGGTGCCTGCAATAACTCTCAATGCAGGCCCCACATATTGTACTGTTGGAAGAGCATGTTAG 1185 0.443 MATSTTLLLLSCFMVHLASTFVSAHSTGNNYYNNTPQPLSKYIPKKPLLNVIDSCWRARPNWSSNRQALADCAIGFGKEATGGKYGAVYHVSDPSDDPANPKPGTLRYGAIQNDPLWIIFDKDMVITLKNELIMSSNKTIDGRGAKVEIADGPCITISNVSHVIIHGISIHDCEPAKPGLNTPDHVGHRLGSDGDAISIIDSTNVWIDHCFLARSTDGLIDVIRASTAITISNNYFTQHDKVMLLGHSDQFTKDKIMKVTIAFNQFASGLTERMPRVRFGYAHVVNNKYDEWKMYAIGGSANPTILSEGNFYVAPNDPNAKQVTKREVKENWKSWKWRSSKDLFFNDAYFVPSGVGSCAPNYSPTQYFAAAPAYMVPAITLNAGPTYCTVGRAC 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3237g00085 394 PRINTS Pollen allergen Amb family signature 335 359 IPR018082 -
Vium3237g00085 394 PRINTS Pollen allergen Amb family signature 72 89 IPR018082 -
Vium3237g00085 394 PRINTS Pollen allergen Amb family signature 95 120 IPR018082 -
Vium3237g00085 394 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Vium3237g00085 394 PRINTS Pollen allergen Amb family signature 365 388 IPR018082 -
Vium3237g00085 394 PRINTS Pollen allergen Amb family signature 131 147 IPR018082 -
Vium3237g00085 394 PRINTS Pollen allergen Amb family signature 193 214 IPR018082 -
Vium3237g00085 394 PRINTS Pollen allergen Amb family signature 273 292 IPR018082 -
Vium3237g00085 394 SMART amb_all 123 318 IPR002022 -
Vium3237g00085 394 Pfam Pectate lyase 130 312 IPR002022 -
Vium3237g00085 394 SUPERFAMILY Pectin lyase-like 50 385 IPR011050 -
Vium3237g00085 394 Gene3D - 49 387 IPR012334 -
Vium3237g00085 394 PANTHER PECTATE LYASE 18-RELATED 46 392 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3237g00085 Vium-Chr3237 541493 543317 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3237g00085 6 394 Polysaccharide Lyase AT4G22080 60.814 4.09e-180 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3237g00085 K01728 - gmx:100807483 704.131