Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3237g00068 ATGGCTGACTTGTTGCAATGGCCAAAGAAAGATAACCGTCGCATGCTCCATGTTGTCTACCGTGTTGGTGACCTTGATCGCACCATCAAGTTTTATACAGAATGTTTTGGAATGAAGCTTTTGAGGCATAGAGATATCCCGGATGAAAAATATGCCAATGCTTTTCTTGGATTTGGCCCTGAAGAATCCCATTTTGTTGTTGAATTAACATATAATTATGGGGTGACCTCGTATGAGATAGGGGATGGCTTTGGACATTTTGCAATTGCAACTCAGGATATTTACAAATCGGTTGAGCTCGTCCGAGCCAAGGGAGGAAACATCACTAGGGAGCCTGGACCAGTTCAGGGTGGGACTACTGTTATTGCCTTTGTGAAGGATCCAGATGGTTACACTTTTGGATTTATCCAAAGACCTACTGTCCATGACCCATTTTGTCAAGTAATGCTTCGTGTTGGAGATTTAGAACGCTCAATTAAGTTTTATGAAAAGGCCTTGGGCATGAAGGTTTTAAGGAAAGTTGATAAGCCTGAGTCCAAGTACACTGCAGTTATGCTTGGGTATGGAGAGGAGCATGAGACAACTGTGTTGGAGTTGACAAATAACTATGGTGTCACTGAGTACTCTAAGGGCAATGCCTATGCACAGATTGCTATTGGTACTGATGATGTATACAAGAGCGCTGAGGTAGTTAGCCAAGTTATACAAGAGGTAGGAGGGAAGATTACAAGGCAACCAGGGCCAATTCCTGGCCTTAATACGAAAATCACTTCGTTTTTAGATCCAGACGGATGGAAAACTGTCCTGGTTGACAATGTTGATTTCTTGGAGGAATTGAAATGA 843 0.4259 MADLLQWPKKDNRRMLHVVYRVGDLDRTIKFYTECFGMKLLRHRDIPDEKYANAFLGFGPEESHFVVELTYNYGVTSYEIGDGFGHFAIATQDIYKSVELVRAKGGNITREPGPVQGGTTVIAFVKDPDGYTFGFIQRPTVHDPFCQVMLRVGDLERSIKFYEKALGMKVLRKVDKPESKYTAVMLGYGEEHETTVLELTNNYGVTEYSKGNAYAQIAIGTDDVYKSAEVVSQVIQEVGGKITRQPGPIPGLNTKITSFLDPDGWKTVLVDNVDFLEELK 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3237g00068 280 ProSitePatterns Glyoxalase I signature 1. 17 38 IPR018146 GO:0004462|GO:0046872
Vium3237g00068 280 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 144 272 IPR037523 -
Vium3237g00068 280 FunFam Lactoylglutathione lyase 140 280 - -
Vium3237g00068 280 CDD GlxI_Ni 15 136 - -
Vium3237g00068 280 NCBIfam lactoylglutathione lyase 14 138 IPR004361 GO:0004462|GO:0046872
Vium3237g00068 280 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 145 272 IPR029068 -
Vium3237g00068 280 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 15 134 IPR004360 -
Vium3237g00068 280 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 147 266 IPR004360 -
Vium3237g00068 280 Gene3D - 1 138 IPR029068 -
Vium3237g00068 280 PANTHER LACTOYLGLUTATHIONE LYASE 3 279 - -
Vium3237g00068 280 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 13 144 IPR029068 -
Vium3237g00068 280 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 14 138 IPR037523 -
Vium3237g00068 280 Gene3D - 141 280 IPR029068 -
Vium3237g00068 280 ProSitePatterns Glyoxalase I signature 1. 147 168 IPR018146 GO:0004462|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3237g00068 Vium-Chr3237 448712 452219 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3237g00068 147 271 Calmodulin-binding Proteins AT1G08110 29.333 8.18e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3237g00068 K01759 - gmx:100793089 534.258