Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3237g00053 ATGGGCTGTCACGGCAGCAAGGAGAAAAAATCAAACGCAGAATTCAGCTCTGCTTATGGATCAGGCACTCGCAGTGGCAGTGGCAGTGGTAGTCAAAACACTGTTCAACCACCACCTACCACCACTGTTGCTCAGGCTCAAACATCACCTCCTCCCAAACCACAAAGACCGTCGGAGGTGGTAGCGAGTGCACCAAAACCCAATCTTTCTCCGACCCAGAATGCGAGGGCGGTGCAGAAACCCGACACCACGATTCTGGGCAAACCCTTTGAGGATATAAAGAAGTACTACACTCTGGGGAAGGAACTGGGAAGAGGGCAATTCGGGGTAACGTATCTGTGCACGGAGAATGCCACCGGAATCACGTACGCGTGCAAGTCGATTCTGAAGAGGAAGCTGGTGTCGAAGGCGGACAGGGAGGATATGAAGAGGGAGATTCATATCATGCAGCATTTGTCTGGGCAGAACAACATTGTGGAGTTCAAGGGGGCGTACGAGGACAGGATGTCGGTCCACCTTGTAATGGAACTCTGCGCCGGCGGGGAGCTATTCGACCGGATCATCGCCCAGGGTCATTACTCTGAGAGAGCCGCCGCCTCACTCTGCCGCGCCATTGTCAACGTTGTTCACATTTGCCACTTCATGGGAGTCTTGCACCGCGATCTCAAGCCCGAAAATTTCCTGCTCTCTTCTAAGGATGACGATGCTACGCTCAAGGCTACTGATTTTGGACTCTCTGTCTTCATTGAAGAAGGGAAGGTATATCATGATATGGTTGGCAGTGCTTACTATGTTGCTCCCGAGGTATTGCGTCGTAGTTATGGAAAAGAAATAGATATTTGGAGTGCAGGCGTCATATTGTATATTCTTCTCAGTGGTGTACCACCTTTTTGGGCTGAAACTGAGAAGGGAATATTTAACGCCATATTGGAAGGTGAACTTGATTTTGCAAGTGAACCATGGCCATCCATATCAGACAGCGCCAAAGATCTAGTCAGGAAGATGCTGACACAAGATCCAAAGAAGCGGATTACTTCTGCACAAGTCCTTGAACACCCGTGGATGAGAGAAGGTGGAGAGGCATCTGATAAACCAATCGATAGTGCAGTTCTATCCAGAATGAAACAATTCAGGGCAATGAATAAGCTCAAGAAGCTTGCATTAAAGGTTATTGCCGAAAATCTATCAGAAGAGGAGATTAAAGGTCTGAAAGCAATGTTTGCAAATATGGACACTGACAATAGTGGCACAATTACCTATGAAGAATTGAAGACTGGCTTGGCTCGAATTGGATCAACATTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCTGCTGATGTTGATGGAAATGGCTCAATCGACTATCTTGAATTCATTTCGGCTACAATGCATAGGCACAGACTTGAACGAGATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGGGTACATTACTAGAGATGAATTGGAGACTGCTATGACCCAACATGGAATGGGTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATACAGATAATGATGGGAGAATAAACTACGAGGAATTTTGTGCAATGATGAGAAGTGGAATGCCACAGCAGGGAGGGTCAGCTAATCCACTAATTGGTTGA 1653 0.4658 MGCHGSKEKKSNAEFSSAYGSGTRSGSGSGSQNTVQPPPTTTVAQAQTSPPPKPQRPSEVVASAPKPNLSPTQNARAVQKPDTTILGKPFEDIKKYYTLGKELGRGQFGVTYLCTENATGITYACKSILKRKLVSKADREDMKREIHIMQHLSGQNNIVEFKGAYEDRMSVHLVMELCAGGELFDRIIAQGHYSERAAASLCRAIVNVVHICHFMGVLHRDLKPENFLLSSKDDDATLKATDFGLSVFIEEGKVYHDMVGSAYYVAPEVLRRSYGKEIDIWSAGVILYILLSGVPPFWAETEKGIFNAILEGELDFASEPWPSISDSAKDLVRKMLTQDPKKRITSAQVLEHPWMREGGEASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIKGLKAMFANMDTDNSGTITYEELKTGLARIGSTLSEAEVKQLMDAADVDGNGSIDYLEFISATMHRHRLERDEHLYKAFQYFDKDNSGYITRDELETAMTQHGMGDEATIKEIISEVDTDNDGRINYEEFCAMMRSGMPQQGGSANPLIG 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3237g00053 550 Pfam Protein kinase domain 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3237g00053 550 FunFam calcium-dependent protein kinase 1 183 362 - -
Vium3237g00053 550 ProSitePatterns EF-hand calcium-binding domain. 411 423 IPR018247 -
Vium3237g00053 550 ProSitePatterns Protein kinases ATP-binding region signature. 103 130 IPR017441 GO:0005524
Vium3237g00053 550 Gene3D Transferase(Phosphotransferase) domain 1 183 362 - -
Vium3237g00053 550 MobiDBLite consensus disorder prediction 65 80 - -
Vium3237g00053 550 SMART efh_1 509 537 IPR002048 GO:0005509
Vium3237g00053 550 SMART efh_1 438 466 IPR002048 GO:0005509
Vium3237g00053 550 SMART efh_1 402 430 IPR002048 GO:0005509
Vium3237g00053 550 SMART efh_1 474 502 IPR002048 GO:0005509
Vium3237g00053 550 SUPERFAMILY Protein kinase-like (PK-like) 95 363 IPR011009 -
Vium3237g00053 550 CDD EFh_PI-PLC 403 536 - -
Vium3237g00053 550 ProSiteProfiles EF-hand calcium-binding domain profile. 398 433 IPR002048 GO:0005509
Vium3237g00053 550 SMART serkin_6 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3237g00053 550 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Vium3237g00053 550 ProSitePatterns EF-hand calcium-binding domain. 518 530 IPR018247 -
Vium3237g00053 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Vium3237g00053 550 MobiDBLite consensus disorder prediction 12 49 - -
Vium3237g00053 550 SUPERFAMILY EF-hand 394 534 IPR011992 -
Vium3237g00053 550 PANTHER SERINE/THREONINE-PROTEIN KINASE 91 530 - -
Vium3237g00053 550 Gene3D Phosphorylase Kinase; domain 1 99 182 - -
Vium3237g00053 550 CDD EFh 477 535 IPR002048 GO:0005509
Vium3237g00053 550 MobiDBLite consensus disorder prediction 1 82 - -
Vium3237g00053 550 FunFam Calcium-dependent protein kinase 1 363 538 - -
Vium3237g00053 550 Pfam EF-hand domain pair 403 463 IPR002048 GO:0005509
Vium3237g00053 550 Pfam EF-hand domain pair 473 535 IPR002048 GO:0005509
Vium3237g00053 550 ProSitePatterns EF-hand calcium-binding domain. 483 495 IPR018247 -
Vium3237g00053 550 ProSiteProfiles Protein kinase domain profile. 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3237g00053 550 ProSiteProfiles EF-hand calcium-binding domain profile. 470 505 IPR002048 GO:0005509
Vium3237g00053 550 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Vium3237g00053 550 Gene3D - 363 537 - -
Vium3237g00053 550 FunFam Calcium-dependent protein kinase 1 99 182 - -
Vium3237g00053 550 ProSiteProfiles EF-hand calcium-binding domain profile. 506 540 IPR002048 GO:0005509
Vium3237g00053 550 CDD STKc_CAMK 97 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3237g00053 Vium-Chr3237 357399 362185 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3237g00053 1 548 EF-hand Containing Proteins AT4G04720 74.681 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium3237g00053 Pkinase 3.1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3237g00053 K13412 - gmx:100816859 919.072