Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3237g00044 ATGATGCAGCCAGGACCCGGCATGGCCCAACAACCCAACCAGCAATATCCACAACAGCAGCAACAGCAACAACCCTACATGATGATGCCGCCGCAGCCGCAGCCCCCTCAGATGTGGGCCCCATCTGCCCAGCCTCCTCCGCAATCGGTGGCTCCTCCGCAGCCTACCAGCGCCGATGAGGTCCGAACCCTCTGGATCGGTGATTTGCAGTACTGGATGGACGAGAACTACATCTACACGTGTTTCGCACATACAGGCGAGGTGGCTTCGGTTAAAGTCATTCGGAACAAACAAACTAGTCAATCGGAGGGATATGGGTTTATTGAATTTACCAGTCGTGCTGGTGCGGAGAGAATCCTTCAAACATACAACGGAACCATTATGCCAAATGGTGGTCAGAACTTCAGATTGAACTGGGCTTCGTTTAGTGCAGGGGACAGGCGTCATGATGACAGCCCGGATCACACTATATTTGTTGGAGACCTGGCTGCAGATGTTACAGATTATCTTCTGCAAGAGACATTTCGGGCTCGGTATCCCTCCGTTAAGGGTGCCAAAGTTGTAATTGATAGGCTTACTGGTCGTACAAAGGGTTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAGGTTAGGGCTATGACTGAAATGCAAGGGGTTCTTTGTTCAACAAGACCCATGCGAATTGGACCTGCCTCTAATAAAAATCCTAGCACCCAGTCCCAGCCAAAAGCATCATATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACAACTATTTTTGTCGGCAATTTGGATCCTAATGTTACCGATGACCATTTGAGACAAGTTTTTGGGCAGTATGGAGAGTTAGTTCACGTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCTGACAGGAGCTGTGCAGAAGAAGCTTTGCGGGTTTTAAACGGCACACTTTTGGGTGGACAAAATGTTCGGCTTTCATGGGGCCGAAGTCCTTCAAACAAACAGGCCCAACCAGATGCAAATCAGTGGAATGGCAGTGGTGGTTACTATGGATATGCTGCGCAGGGTTATGAAAATTATGGTTATGCTCCTGCTGGACAAGATCCCAATATGTATGGCAGTTATCCGGGCTACGCAAATTACCAACCTCCTCAGCAACAACAGCAAATAGGATATAGCTAA 1194 0.4824 MMQPGPGMAQQPNQQYPQQQQQQQPYMMMPPQPQPPQMWAPSAQPPPQSVAPPQPTSADEVRTLWIGDLQYWMDENYIYTCFAHTGEVASVKVIRNKQTSQSEGYGFIEFTSRAGAERILQTYNGTIMPNGGQNFRLNWASFSAGDRRHDDSPDHTIFVGDLAADVTDYLLQETFRARYPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPSTQSQPKASYQNPQGAQNEHDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDANQWNGSGGYYGYAAQGYENYGYAPAGQDPNMYGSYPGYANYQPPQQQQQIGYS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3237g00044 397 MobiDBLite consensus disorder prediction 377 397 - -
Vium3237g00044 397 MobiDBLite consensus disorder prediction 383 397 - -
Vium3237g00044 397 FunFam Polyadenylate-binding protein RBP45 5 146 - -
Vium3237g00044 397 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 53 338 - -
Vium3237g00044 397 MobiDBLite consensus disorder prediction 1 27 - -
Vium3237g00044 397 SUPERFAMILY RNA-binding domain, RBD 25 143 IPR035979 GO:0003676
Vium3237g00044 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 334 IPR000504 GO:0003723
Vium3237g00044 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 234 IPR000504 GO:0003723
Vium3237g00044 397 Gene3D - 148 240 IPR012677 -
Vium3237g00044 397 Gene3D - 5 147 IPR012677 -
Vium3237g00044 397 SUPERFAMILY RNA-binding domain, RBD 139 242 IPR035979 GO:0003676
Vium3237g00044 397 MobiDBLite consensus disorder prediction 28 53 - -
Vium3237g00044 397 Gene3D - 241 368 IPR012677 -
Vium3237g00044 397 FunFam Polyadenylate-binding protein RBP45C 240 368 - -
Vium3237g00044 397 SMART rrm1_1 156 230 IPR000504 GO:0003723
Vium3237g00044 397 SMART rrm1_1 263 330 IPR000504 GO:0003723
Vium3237g00044 397 SMART rrm1_1 63 138 IPR000504 GO:0003723
Vium3237g00044 397 SUPERFAMILY RNA-binding domain, RBD 246 360 IPR035979 GO:0003676
Vium3237g00044 397 MobiDBLite consensus disorder prediction 226 261 - -
Vium3237g00044 397 FunFam Polyadenylate-binding protein RBP45C 147 239 - -
Vium3237g00044 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 327 IPR000504 GO:0003723
Vium3237g00044 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 220 IPR000504 GO:0003723
Vium3237g00044 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 129 IPR000504 GO:0003723
Vium3237g00044 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 142 IPR000504 GO:0003723
Vium3237g00044 397 MobiDBLite consensus disorder prediction 229 261 - -
Vium3237g00044 397 CDD RRM2_SECp43_like 154 233 - -
Vium3237g00044 397 CDD RRM1_SECp43_like 63 143 - -
Vium3237g00044 397 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3237g00044 Vium-Chr3237 307436 311850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3237g00044 64 344 Eukaryotic Initiation Factors Gene Family AT4G34110 25.436 6.11e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3237g00044 - - gmx:100796848 672.159