Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3237g00029 ATGCAAGTCACCAAGGTCGCCAGGACATTGGCTGCAAAGCCAACTGGAGTTGATGGGGAGCACAAGTCATGTTCCATCATGGCTCTGCTAGATGGAGGAACACTAAAAAGACAGAAGACTTGGTTAAAGGCAGAGCCACCAACAATAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACATACTTTTTCGCTTGAAACTGTGCGTGTGCTGATTGTTGATGAGGTTGACTGTATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTTCGAAAGATTTTGACTTCATATTCATCTTCCAACAACCGTCAGACGGTCTTTGCCAGTGCATCTATACCACAGCATAACCGATTTATTCATGACTCTGTGCAGCAAAAATGGACAAAGAGAGATGTGGTCCATATTCATGTCAGTGCAGTGGAGCCCATGCCATCTCGCCTATATCATAGATTTATAAGATGTGAAACCAAAAGAAAATTACAAACCCTGTTATCCTTGTTACAATCTGATGCACCTGAGTCTGGCATTATATTTGTTGCTGAGCAGTCTGAGAAGTCCAAAAAGGCTGGAAAGGCTCCATCAACGTCCCTTCTGATTGACTTTTTGAAGACATCATACCAAGGTGATTTGGATGTCCTCCTCCTTGAAGACAAAATGAATTTCAATTCACGAGCAGCTTCACTGCTTGAGGTTAGAAAAGGAGGTGGATATCTTCTTGTAGCAACAGATATAGCTGCTAGGGGGGTTGACCTTCCAGAAATGTCTCACATTTACAACTTTGATCTGCCAAGGACTGCAGTTGATTATCTTCATCGAGCAGGCCGAACATGTAGGAAGCCTTTTTCTGACATCAATTGTACTGTTACCAGCATTATTGTTCCAGATGAGCGATTTGTTCTGCAGAGATATGAAAATGAGTTGATGTTTGACTGTGAAGAACTTATTATTCCATAA 960 0.4177 MQVTKVARTLAAKPTGVDGEHKSCSIMALLDGGTLKRQKTWLKAEPPTIVVATVGSLCQMLERHTFSLETVRVLIVDEVDCIFNSSKQVSSLRKILTSYSSSNNRQTVFASASIPQHNRFIHDSVQQKWTKRDVVHIHVSAVEPMPSRLYHRFIRCETKRKLQTLLSLLQSDAPESGIIFVAEQSEKSKKAGKAPSTSLLIDFLKTSYQGDLDVLLLEDKMNFNSRAASLLEVRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAVDYLHRAGRTCRKPFSDINCTVTSIIVPDERFVLQRYENELMFDCEELIIP 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3237g00029 319 Pfam Helicase conserved C-terminal domain 161 280 IPR001650 -
Vium3237g00029 319 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 306 IPR027417 -
Vium3237g00029 319 SMART helicmild6 198 282 IPR001650 -
Vium3237g00029 319 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 132 IPR014001 -
Vium3237g00029 319 Gene3D - 146 316 IPR027417 -
Vium3237g00029 319 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 1 309 - -
Vium3237g00029 319 Gene3D - 1 136 IPR027417 -
Vium3237g00029 319 Pfam DEAD/DEAH box helicase 24 116 IPR011545 GO:0003676|GO:0005524
Vium3237g00029 319 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 161 319 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3237g00029 Vium-Chr3237 186311 191379 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3237g00029 2 304 Eukaryotic Initiation Factors Gene Family AT3G13920 25.490 5.48e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3237g00029 - - gmx:100786205 604.364