Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3237g00028 ATGGACAGCAGCACGGTCTCATTGTTGTCGCCTCTTCCCACTCTTCGTTTTCTTTCATCTGAAAAATTAACTCCTACCTTTTACGTCCTTCCTCCTCACAACCATTTTCTCAAACACTTCTCCTACGCCACTAACCTTAATCGCAACTCCAAATTCAGAACTCCAGAAGCCGTTCTCGATACCTCTCCCATAACCCCAACAGCGCTCACCACTCCCTCTCTCAGAGAATTATGCCAACCTTACGTTCCTCAACATATATTGCAAAGGATGGAAGAGATTGGATATGTAATGCCCACAGATATCCAGAGGGAAGCTTTGCCTTATCTTTTTTCCGGGCGTGACTGCATTCTTCATGCTCAGACAGGTTCTGGGAAGACACTCACATACCTGCTTTTGATTCACTCCCTCATTAATGCTGCAAAATCCTCTGTGCAAGCCCTAGTTGTTGTGCCCACCCGGGAACTCGGAATGCAAGTCACCAAGGTCGCCAGGACATTGGCTGCAAAGCCAACTGGAGTTGATGGGGAGCACAAGTCATGTTCCATCATGGCTCTGCTAGATGGAGGAACACTAAAAAGACAGAAGACTTGGTTAAAGGCAGAGCCACCAACAATAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACATACTTTTTCGCTTGAAACTGTGCGTGTGCTGATTGTTGATGAGGTTGACTGTATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTTCGAAAGATTTTGACTTCATATTCATCTTCCAACAACCGTCAGACGGTCTTTGCCAGTGCATCTATACCACAGCATAACCGATTTATTCATGACTCTGTGCAGCAAAAATGGACAAAGAGAGATGTGGTCCATATTCATGTCAGTGCAGTGGAGCCCATGCCATCTCGCCTATATCATAGATTTATAAGATGTGAAACCAAAAGAAAATTACAAACCCTGTTATCCTTGTTACAATCTGATGCACCTGAGTCTGGCATTATATTTGTTGCTGAGCAGTCTGAGAAGTCCAAAAAGGCTGGAAAGGCTCCATCAACGTCCCTTCTGATTGACTTTTTGAAGACATCATACCAAGGTGATTTGGATGTCCTCCTCCTTGAAGACAAAATGAATTTCAATTCACGAGCAGCTTCACTGCTTGAGGTTAGAAAAGGAGGTGGATATCTTCTTGTAGCAACAGATATAGCTGCTAGGGGGGTTGACCTTCCAGAAATGTCTCACATTTACAACTTTGATCTGCCAAGGACTGCAGTTGATTATCTTCATCGAGCAGGCCGAACATGTAGGAAGCCTTTTTCTGACATCAATTGTACTGTTACCAGCATTATTGTTCCAGATGAGCGATTTGTTCTGCAGAGATATGAAAATGAGTTGATGTTTGACTGTGAAGAACTTATTATTCCATAA 1428 0.4335 MDSSTVSLLSPLPTLRFLSSEKLTPTFYVLPPHNHFLKHFSYATNLNRNSKFRTPEAVLDTSPITPTALTTPSLRELCQPYVPQHILQRMEEIGYVMPTDIQREALPYLFSGRDCILHAQTGSGKTLTYLLLIHSLINAAKSSVQALVVVPTRELGMQVTKVARTLAAKPTGVDGEHKSCSIMALLDGGTLKRQKTWLKAEPPTIVVATVGSLCQMLERHTFSLETVRVLIVDEVDCIFNSSKQVSSLRKILTSYSSSNNRQTVFASASIPQHNRFIHDSVQQKWTKRDVVHIHVSAVEPMPSRLYHRFIRCETKRKLQTLLSLLQSDAPESGIIFVAEQSEKSKKAGKAPSTSLLIDFLKTSYQGDLDVLLLEDKMNFNSRAASLLEVRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAVDYLHRAGRTCRKPFSDINCTVTSIIVPDERFVLQRYENELMFDCEELIIP 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3237g00028 475 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 317 475 IPR001650 -
Vium3237g00028 475 Gene3D - 73 292 IPR027417 -
Vium3237g00028 475 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 106 288 IPR014001 -
Vium3237g00028 475 Pfam Helicase conserved C-terminal domain 317 436 IPR001650 -
Vium3237g00028 475 SMART ultradead3 94 309 IPR014001 -
Vium3237g00028 475 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 60 465 - -
Vium3237g00028 475 Gene3D - 302 472 IPR027417 -
Vium3237g00028 475 SMART helicmild6 354 438 IPR001650 -
Vium3237g00028 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 440 IPR027417 -
Vium3237g00028 475 CDD SF2_C_DEAD 307 436 - -
Vium3237g00028 475 CDD DEADc 86 272 - -
Vium3237g00028 475 Pfam DEAD/DEAH box helicase 99 272 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3237g00028 Vium-Chr3237 185887 191379 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3237g00028 84 460 Eukaryotic Initiation Factors Gene Family AT3G13920 26.842 4.77e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3237g00028 - - gmx:100786205 835.484