Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3237g00027 ATGGACAGCAGCACGGTCTCATTGTTGTCGCCTCTTCCCACTCTTCGTTTTCTTTCATCTGAAAAATTAACTCCTACCTTTTACGTCCTTCCTCCTCACAACCATTTTCTCAAACACTTCTCCTACGCCACTAACCTTAATCGCAACTCCAAATTCAGAACTCCAGAAGCCGTTCTCGATACCTCTCCCATAACCCCAACAGCGCTCACCACTCCCTCTCTCAGAGAATTATGCCAACCTTACGTTCCTCAACATATATTGCAAAGGATGGAAGAGATTGGATATGTAATGCCCACAGATATCCAGAGGGAAGCTTTGCCTTATCTTTTTTCCGGGCGTGACTGCATTCTTCATGCTCAGACAGGTTCTGGGAAGACACTCACATACCTGCTTTTGATTCACTCCCTCATTAATGCTGCAAAATCCTCTGTGCAAGCCCTAGTTGTTGTGCCCACCCGGGAACTCGGAATGCAAGTCACCAAGGTCGCCAGGACATTGGCTGCAAAGCCAACTGGAGTTGATGGGGAGCACAAGTCATGTTCCATCATGGCTCTGCTAGATGGAGGAACACTAAAAAGACAGAAGACTTGGTTAAAGGCAGAGCCACCAACAATAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACATACTTTTTCGCTTGAAACTGTGCGTGTGCTGATTGTTGATGAGGTTGACTGTATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTTCGAAAGATTTTGACTTCATATTCATCTTCCAACAACCGTCAGACGGTCTTTGCCAGTGCATCTATACCACAGCATAACCGATTTATTCATGACTCTGTGCAGCAAAAATGGACAAAGAGAGATGTGGTCCATATTCATGTCAGTGCAGTGGAGCCCATGCCATCTCGCCTATATCATAGATTTATAAGATGTGAAACCAAAAGAAAATTACAAACCCTGTTATCCTTGTTACAATCTGATGCACCTGAGTCTGGCATTATATTTGTTGCTGAGCAGTCTGAGAAGTCCAAAAAGGCTGGAAAGGCTCCATCAACGTCCCTTCTGATTGACTTTTTGAAGACATCATACCAAGGTGATTTGGATGTCCTCCTCCTTGAAGACAAAATGAATTTCAATTCACGAGCAGCTTCACTGCTTGTAAGTGCCATTCAGTGGATTGATATTGATATGAGTATTTTTTGGAGGTTAGAAAAGGAGGTGGATATCTTCTTGTAG 1239 0.4358 MDSSTVSLLSPLPTLRFLSSEKLTPTFYVLPPHNHFLKHFSYATNLNRNSKFRTPEAVLDTSPITPTALTTPSLRELCQPYVPQHILQRMEEIGYVMPTDIQREALPYLFSGRDCILHAQTGSGKTLTYLLLIHSLINAAKSSVQALVVVPTRELGMQVTKVARTLAAKPTGVDGEHKSCSIMALLDGGTLKRQKTWLKAEPPTIVVATVGSLCQMLERHTFSLETVRVLIVDEVDCIFNSSKQVSSLRKILTSYSSSNNRQTVFASASIPQHNRFIHDSVQQKWTKRDVVHIHVSAVEPMPSRLYHRFIRCETKRKLQTLLSLLQSDAPESGIIFVAEQSEKSKKAGKAPSTSLLIDFLKTSYQGDLDVLLLEDKMNFNSRAASLLVSAIQWIDIDMSIFWRLEKEVDIFL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3237g00027 412 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 106 288 IPR014001 -
Vium3237g00027 412 Gene3D - 73 292 IPR027417 -
Vium3237g00027 412 SMART ultradead3 94 309 IPR014001 -
Vium3237g00027 412 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 60 342 - -
Vium3237g00027 412 CDD DEADc 86 272 - -
Vium3237g00027 412 Pfam DEAD/DEAH box helicase 99 272 IPR011545 GO:0003676|GO:0005524
Vium3237g00027 412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 273 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3237g00027 Vium-Chr3237 185882 191223 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3237g00027 82 236 Eukaryotic Initiation Factors Gene Family AT3G19760 29.032 4.42e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3237g00027 - - gmx:100786205 665.225