Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3237g00020 ATGGCATTTTCTGCTTCAACTCACAAATCTACAGGAATTCATCCAGGGGCAATCAATGATGATTTATACAAGGAGTTGTGGCATGCCTGTGCTGGTCCCCTTGTCTCTCTCCCTCGTGAAGGGGAGCGAGTTTATTACTTTCCACAAGGTCACATGGAACAGCTTGAGGCATCGATGCACGAGGGATTGGAGCAGCAGATGCCTTCCTTCAATCTGCCTTCTAAAATATTATGTAAAGTGGTCAATGTTCATCTTCGGGCTGAATCCGAAACAGATGAAGTATATGCACAAATAACTTTGCTTCCTGGAGCAGATCAAAGTGAGGTGACGAGCCCTGATGATCCTTTGACTGAAACTCCAAGGGCCAAGATCCATTCATTTTGCAAGACACTTACTGCTTCTGACACCAGTACCCATGGGGGTTTCTCTGTTCTTCGAAGACATGCCGATGATTGTCTGCCTCCATTGGATATGTCACAGCAACCACCATGGCAAGAATTGGTTGCAACTGATTTACACGGGAATGAATGGCATTTTAGACATATTTTTCGAGGGCAACCCAAGCGCCACTTACTTACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCCTTTATATTCTTAAGGGGTGAAAATGGAGAGCTGCGAGTTGGGGTTAGGAGGGTGATGAGACAGCAGAGCAATGCGCCTTCTTCTGTTATATCTAGTCACAGTATGCATCTAGGTGTTCTGGCCACTGCATCTCATGCCATTGCCACTGGAACACTGTTTTCTGTGTTTTACAAGCCCAGAACAAGCCGGTCAGAGTTTATTGTGAGCGTCAACAAGTATCTGGAAGCTCAGAGCCACAAACTCTCTGTCGGGATGAGATTCAAAATGAGATTTGAGGGTGATGAAATTCCCGAAAGAAGGTTCAGTGGCACAATTGTGGGTGTTGGAGATAATAAATCACCGGTATGGCCTGATTCCGTGTGGCGATCCTTAAAGGTACAATGGGACGAGCCATCATCAATTTTGCGCCCTGATAGAGTTTCTTCATGGGAATTGGAGCCACATGTCTCTACCACTCCTGCAAACCCGCAGCCAACACAAAGAAACAAGAGGGCACGACCTCTTATTGTACCTTCTACAGTGCCTGATTCTTCTTTGCAAGGCATGTGGAAATCTGCCGCTGAATCTACATCTTTCTCTTATTGTGATCCTCAACATGGACGTGGCCTCCATCAATCACCTAAGTTCAATCCTTCTGCAACTAACTTTATTGGTTTTAGTGGGAATAGCTTTGTGGGACCTCCTTCCAACAAATCAATATATTGGTCTAATAGGATGGAAAATTCCTTGGAATCAATTTCAGCTATAGCCTTTAAAGAAGCTGGAGAGAAGAGACAAGGCACTGGAAATGGCTGCAGACTCTTTGGGATTCAGCTACTTGAGAATTCTAATGCAGAAGGAAGTCTACAAACAGTCTCTTTATCTGGAAGGCTGGGTGATGATAGGTTTATTCCATCATTAGATGTTGAATCTGATCAGCATTCTGAGCCATCAAATGCCAATCGGTCTGATATTCCTTCAGTAAGTTGTGATGCTGAAAAATCATGCCTGTCTCCTCAGGAGTCGCAAAGCAAGCAAATAAGGAGCTGTACGAAGGTTCACATGCAAGGAATGGCTGTTGGGAGGGCTGTGGATTTAACACGATTTTGTGGGTACGAAGATCTGCTCATGAAATTAGAAGAGATGTTTGACATCAAGGCTGAGCTGTGTGGGTCCATAAAAAAATGGCAGGTTGTCTACACTGATGACGAAGATGATATGATGATGGTTGGAGACGATCCATGGGATGAGTTCTGTAGTGTTGTGAGGAAAATTTTCATCTACACGGCAGAGGAGGTAAAGAAGCTCTCCCCGAAAATAGGACTTCCAGCGAATGAAAAATTGAAAGCAAACAAGCAGGATTGGGAAGAAATATTCAATCCCGAGGAGCAGTCGTCTAATGTGGGGCCCAGTTGCTAG 2028 0.4467 MAFSASTHKSTGIHPGAINDDLYKELWHACAGPLVSLPREGERVYYFPQGHMEQLEASMHEGLEQQMPSFNLPSKILCKVVNVHLRAESETDEVYAQITLLPGADQSEVTSPDDPLTETPRAKIHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPKRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRVMRQQSNAPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMRFEGDEIPERRFSGTIVGVGDNKSPVWPDSVWRSLKVQWDEPSSILRPDRVSSWELEPHVSTTPANPQPTQRNKRARPLIVPSTVPDSSLQGMWKSAAESTSFSYCDPQHGRGLHQSPKFNPSATNFIGFSGNSFVGPPSNKSIYWSNRMENSLESISAIAFKEAGEKRQGTGNGCRLFGIQLLENSNAEGSLQTVSLSGRLGDDRFIPSLDVESDQHSEPSNANRSDIPSVSCDAEKSCLSPQESQSKQIRSCTKVHMQGMAVGRAVDLTRFCGYEDLLMKLEEMFDIKAELCGSIKKWQVVYTDDEDDMMMVGDDPWDEFCSVVRKIFIYTAEEVKKLSPKIGLPANEKLKANKQDWEEIFNPEEQSSNVGPSC 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3237g00020 675 SMART B3_2 127 229 IPR003340 GO:0003677
Vium3237g00020 675 Gene3D - 546 640 - -
Vium3237g00020 675 FunFam Auxin response factor 290 362 - -
Vium3237g00020 675 Pfam AUX/IAA family 547 641 IPR033389 -
Vium3237g00020 675 FunFam Auxin response factor 125 229 - -
Vium3237g00020 675 SUPERFAMILY DNA-binding pseudobarrel domain 115 256 IPR015300 -
Vium3237g00020 675 Gene3D - 290 363 - -
Vium3237g00020 675 Gene3D - 124 229 IPR015300 -
Vium3237g00020 675 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Vium3237g00020 675 SUPERFAMILY CAD & PB1 domains 553 628 - -
Vium3237g00020 675 CDD B3_DNA 125 227 IPR003340 GO:0003677
Vium3237g00020 675 FunFam Auxin response factor 546 640 - -
Vium3237g00020 675 Pfam Auxin response factor 253 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium3237g00020 675 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Vium3237g00020 675 ProSiteProfiles PB1 domain profile. 551 644 IPR000270 GO:0005515
Vium3237g00020 675 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 640 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3237g00020 Vium-Chr3237 118308 126613 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3237g00020 5 674 B3 DNA Binding Superfamily AT1G59750 68.694 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium3237g00020 AUX_IAA 4.8e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3237g00020 K14486 - gmx:100815450 1241.48