Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3237g00008 ATGGCTCCGCTGATCCTGCATGGTGGCAAAACAAACAAAAATTCCTACAAGACACTTATTGCAGCGGAGTACGTAGGCGTTCAAGTTGAGCTTGCTCCAAATTTTGAGATGGGTGTATCCAATAAAACTCCTGAATTTCTCCAGATGAATCCTATTGGCAAGGTTCCTGTCTTGGAAACACCCGATGGTCCAGTGTTTGAGAGCAATTCCATTGCTCGCTATGTTACCCGGCTCAAAGGTGACAACACTTTGTACGGTTCATCTTTGATTCAATACGCCCAGATTGAACAGTGGATTGATTTTGCATCACTTGAGATTGATGCCAATATTATTAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATACCTTCCTCCGGCTGAGGAGGCTGCAATTTCTGCACTAAAGAGAGCTTTGGGTGCTTTGAACACTCACCTCGCCTCCAATACTTACCTGGTTGGGCATTCTGTGACCCTGGCTGACATCATATTGACATGCAATTTGTATTTGGGTTTTGCAAACATCCTTGTTAAGAGCTTCACCTCTGAGTTTCCTCATGTTGAAAGATATTTTTGGACCTTGGTCAATCAACCAAACTTCCGAAAGATATTTGGACAGGTCAAGCAGACTGACTCTGTTCCACCTCTTCAATCTGCAAAGAAGCCTTCCCAGCCAAAGGAAACTAAGCCCAAGGCCAAAGAGGAGCCAAAGAAAGAGGCCAAAAAAGAGCCAGAAAAGCCCAAAGAAGCAGCAGAGGAAGAGGCACCTAAGCCTAAACCCAAGAATCCCCTTGATCTTCTCCCTCCAAGTCCAATGATACTGGATGAGTGGAAAAGACTGTACTCCAACACTAAAACAAACTTCAGGGAGGTTGCTATCAAAGGATTTTGGGACATGTATGATGCTGAGGGATACTCTCTCTGGTTTTGTGATTACAAATACAATGATGAGAATACTGTTTCTTTCGTGACATTGAACAAGGTTGGTGGATTTCTTCAGCGGATGGATTTGGCTCGCAAGTATGCATTTGGAAAGATGCTAGTGATTGGATCAAATCCACCGTTTAAGGTGAAGGGGCTGTGGCTTTTCCGTGGGCAAGAAATCCCACAGTTTGTGATTGATGAATGCTATGACATGGAACTTTACGAGTGGACGAAGGTTGACATATCTGATGAAGTTCAAAAGGAGCGTGTCAATCAGATGATAGAAGATTTCGAACCTTTTGAGGGCGAGGCTCTTCTGGATGCCAAGTGCTTTAAGTGA 1263 0.4426 MAPLILHGGKTNKNSYKTLIAAEYVGVQVELAPNFEMGVSNKTPEFLQMNPIGKVPVLETPDGPVFESNSIARYVTRLKGDNTLYGSSLIQYAQIEQWIDFASLEIDANIIKWYAPRVGRGPYLPPAEEAAISALKRALGALNTHLASNTYLVGHSVTLADIILTCNLYLGFANILVKSFTSEFPHVERYFWTLVNQPNFRKIFGQVKQTDSVPPLQSAKKPSQPKETKPKAKEEPKKEAKKEPEKPKEAAEEEAPKPKPKNPLDLLPPSPMILDEWKRLYSNTKTNFREVAIKGFWDMYDAEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSNPPFKVKGLWLFRGQEIPQFVIDECYDMELYEWTKVDISDEVQKERVNQMIEDFEPFEGEALLDAKCFK 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3237g00008 420 Pfam Elongation factor 1 gamma, conserved domain 259 367 IPR001662 GO:0003746|GO:0006414
Vium3237g00008 420 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 4 420 IPR044628 GO:0004364
Vium3237g00008 420 SUPERFAMILY eEF1-gamma domain 260 420 IPR036433 GO:0003746|GO:0006414
Vium3237g00008 420 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 83 IPR004045 -
Vium3237g00008 420 Pfam Glutathione S-transferase, C-terminal domain 131 198 IPR004046 -
Vium3237g00008 420 FunFam Elongation factor 1-gamma 1 260 420 - -
Vium3237g00008 420 CDD GST_N_EF1Bgamma 6 78 - -
Vium3237g00008 420 SFLD Main (cytGST) 6 191 - -
Vium3237g00008 420 SMART EF1G_2 259 367 IPR001662 GO:0003746|GO:0006414
Vium3237g00008 420 MobiDBLite consensus disorder prediction 211 268 - -
Vium3237g00008 420 FunFam Elongation factor 1 gamma 81 217 - -
Vium3237g00008 420 CDD GST_C_EF1Bgamma_like 91 211 - -
Vium3237g00008 420 Gene3D Glutaredoxin 1 75 - -
Vium3237g00008 420 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 260 420 IPR036433 GO:0003746|GO:0006414
Vium3237g00008 420 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 216 IPR010987 -
Vium3237g00008 420 Pfam Glutathione S-transferase, N-terminal domain 3 76 IPR004045 -
Vium3237g00008 420 FunFam Elongation factor 1B gamma 3 75 - -
Vium3237g00008 420 Gene3D - 81 216 - -
Vium3237g00008 420 MobiDBLite consensus disorder prediction 224 260 - -
Vium3237g00008 420 SUPERFAMILY GST C-terminal domain-like 74 212 IPR036282 -
Vium3237g00008 420 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 260 420 IPR001662 GO:0003746|GO:0006414
Vium3237g00008 420 SFLD Glutathione Transferase (cytosolic) 6 191 IPR040079 -
Vium3237g00008 420 SUPERFAMILY Thioredoxin-like 1 86 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3237g00008 Vium-Chr3237 72829 75614 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3237g00008 4 420 Eukaryotic Initiation Factors Gene Family AT1G57720 73.381 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3237g00008 K03233 - gmx:547637 741.88