Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3236g00004 ATGATGGAACAGTCTAGATTCTACAAACATCTTCAATGCAATACCATGGAGCCTAGAAATGAGGAGTTCCAGTCGGGATCTCAATCAGTAATTCAGGACCATATGGATGGCATGCAGAGTATTAGACGGCCATCTGACTATAGCACATCAGATGTTAAACCGGTCCTTAATTATTCAATACAGACGGGTGAGGAATTTGCTCTTGAATTCATGCGAGATAGGGTGAATCTCAGGAAGCCCATGTTTTCAAATGTTAATGATTCCAATTCCAATTATGCAACTGGCTGCATGGAACTGAAAGGTGTCTTAGGCATCAACCACACAGCTTCTGAAAGTGGATCAGACATTTCTATTCTATCAAAAACTGAGAAAGGTCTGACAGAGTTTAACAGACCGAGTACATCATTACATGGAGACAGAAGCAATTATGGGTCAATTCGGTCAATGCCAAGAGTTTCATTGAATCAGGAGAATAGTCGATTTGTACGTGGGTATGGGTCTTCTGTTGGTTCTGACAGCTCATCAATGATGAAGTGTCTTTGTAGCTTTGGTGGCAGAATATTACCACGACCAAGTGATGGGAAGTTAAGGTATGTTGGAGGTCAAACTCGTATTCTTCGTCTAAGAAAGGACATATCTTGGCAGGAGCTTATGCAAAAAGCATTATTAATTTATAATCTGGTTCATGTACTAAAATATCAACTTCCTGGGGAAGATCTCGATGCATTGGTATCAGTGTCGTCTGATGAGGATTTGCAGAATATGATGGAAGAATGTAATCTTCTAGAAGATAGAGAGCGCTCAAAAAAGCTTAGGCTGTTTTTGTTCTCAATGAGTGATTTGGAAGATGCTCATTTTTCTCTCAGCAGCATTAGTGATGACTCTGAGGTCCAATATGTTGTTGCTGTTAATGGCATGGACTTTGGATCAATAAACAGCTCAACCCCACTTGGTGTCAGTTTCTCAGCTGATGATCTGCATGAATTGGAAAGGCAAACTTCACAGAGAGAGACTAATAATAGAGCTGCTGTAGAATCTGTAGGTGCCAGCGCTCCCTTGACTAACAAATCTGATCCTTCATTGACTATTCATTCTTCACAAGCAGTTCTACCAAATGCCTCAAATTCTTATGAACTTGATCAACATTCTTATGGTGACCAAATGCCTCAATTTGGGGATTATAGTCGTCAATATTTTGTTCACCATGGCCTTAATTCCACTCATAGCCCTGTTGGAGAGACTTTTATTCCTATGGCTCCTCATCTGCTTAACAATCAACAAGGGGTTCAGAATGAAGACCATGTATCTAGTGGATTACAAATTCAAAATTCTCAGTTATCTGCAATGCAGGTGAAAAAGATAAGTGATAATTCAGTTAAGCAAGGGAGTGACTCTGAAAATGTTTTAACCTCAGAAACCACGTCTCCAGCTCCCTTACAAACCTCTGACAGTGGCTTAAAAAGTAATTTTCATGAAGCATCGGTTGTAGTTACCATGCCTGAGGGACATCCACCTTCATTACCTTCAACAAAAAAGGTTCAGCACAAGGATTATGAAGAGTTGTCTTCTACTTCTAGCAGTGCATTTGTTCCTGCTTATGTTGATTCCCATCCAAATGCAATTGATTTGAGTTGTCTTCATCCTCCTCCACTTCCTGAAAGAGTTTATTATTCAGAAAGAACTCCGAGGGAGCAAGTAGAGTTGCTGAATCGTTCCTCAAAGTCAGATGACACACACAGTTCTCAACTACATGTGTCAGATTTACTTTCTGATGTCAACCCAGAGGACCCAGTAACAGAATCTGGGGGCAACTTGCATCCAACTGACGAATTGGGTAATGCAGAAAAGCCCTTGCATGCAGATGGCCATACCACTGACAATGGGTTTTCCAAAAATCAAATGAGCAAACCATTGCCTGATACAAACAGTCTTATTAAGTCAAAACTATCTGAGCTCACAGACCCTGAGTTGAAGCCAGTGTTATCAAGTAATGAAGGAACTAAAGATGTTGAAACTGAAAATTATCGTAAAGATAGCCAAATAAAGCCCTTGCTTGACGAAACTGAAACCAAGACCAAAACCAAAGATGGTAAATCAAATGTTCCTACTTTGCATCATGTTTCCTCTGCTAAGCGTCTTGATGATCTAGCATCCAATCTTCCAGAGATTGATTGGGGTGAAGCCTCAGGGAAGGAATCAAATGATGGTTGTGTGGTGGAAGAACTACCTGTATCTGTAACTGGGAGTGTAACTAAAGATGTTAATCAAGATTTCCCCCAAAATGTTGTTTCCAAACAATCTCAAGGGGACATTCTTATTGACATTGATGATCGATTTCCCCGCGAATTGCTTTCAGATATGTTTTCTAAAGCAATACATGGAGAAGATCCCTCCAGTCTGCATCCATTGTCTGGAGATGGAGTAGGCTTAAGCATAAATATGGAAAATCATGAACCCAAAAGATGGTCATATTTTCATAAATTAGCACAAGGGCTTGATAACGTCTCTCTTATTGATCAAGATCATCTTGGTTTTCCACCTGGAATAGGAAAAACAGAAGATAATAGAACTCATCATGTTATGCCGCTAACAACTGATGGAGATCCCCTACATCATGAAGATTCCCATCTCAAATTTAATGAAGAAAATCCTGAGGACTTACATGTTAGGATTGAAACTGAAACTACCATTCTGAAGTCTAATTATAATCAATCCCAGCTTAAGGACAATGAAAGCATGCAGTTTGATGCTATGATGGAAAATCTAAGAATGCAAGGGTCAGAGTTTGAGGATGGCAAATTTGATGTGAAAAATAGCAACCTACCTCCAGCCCTTGATCCTTCTTTTGGAGATATTGACATTAGTACTGTGCAGGTAAAATCATGTTCTTATATATGCTACATTTCTTATATACTTTTTTTCATACACGGAACATGTTTTTATATTTTTGGGCAAACTGAAGGCTCTGTTGCCTTCCCAATAAGCCTTGCACCTGCTGCAAAGAGTAGATTATATCACTTGTGTAAATGGATAATTTGTGTATGTTTCAACTTGCAGGAATAA 3063 0.3941 MMEQSRFYKHLQCNTMEPRNEEFQSGSQSVIQDHMDGMQSIRRPSDYSTSDVKPVLNYSIQTGEEFALEFMRDRVNLRKPMFSNVNDSNSNYATGCMELKGVLGINHTASESGSDISILSKTEKGLTEFNRPSTSLHGDRSNYGSIRSMPRVSLNQENSRFVRGYGSSVGSDSSSMMKCLCSFGGRILPRPSDGKLRYVGGQTRILRLRKDISWQELMQKALLIYNLVHVLKYQLPGEDLDALVSVSSDEDLQNMMEECNLLEDRERSKKLRLFLFSMSDLEDAHFSLSSISDDSEVQYVVAVNGMDFGSINSSTPLGVSFSADDLHELERQTSQRETNNRAAVESVGASAPLTNKSDPSLTIHSSQAVLPNASNSYELDQHSYGDQMPQFGDYSRQYFVHHGLNSTHSPVGETFIPMAPHLLNNQQGVQNEDHVSSGLQIQNSQLSAMQVKKISDNSVKQGSDSENVLTSETTSPAPLQTSDSGLKSNFHEASVVVTMPEGHPPSLPSTKKVQHKDYEELSSTSSSAFVPAYVDSHPNAIDLSCLHPPPLPERVYYSERTPREQVELLNRSSKSDDTHSSQLHVSDLLSDVNPEDPVTESGGNLHPTDELGNAEKPLHADGHTTDNGFSKNQMSKPLPDTNSLIKSKLSELTDPELKPVLSSNEGTKDVETENYRKDSQIKPLLDETETKTKTKDGKSNVPTLHHVSSAKRLDDLASNLPEIDWGEASGKESNDGCVVEELPVSVTGSVTKDVNQDFPQNVVSKQSQGDILIDIDDRFPRELLSDMFSKAIHGEDPSSLHPLSGDGVGLSINMENHEPKRWSYFHKLAQGLDNVSLIDQDHLGFPPGIGKTEDNRTHHVMPLTTDGDPLHHEDSHLKFNEENPEDLHVRIETETTILKSNYNQSQLKDNESMQFDAMMENLRMQGSEFEDGKFDVKNSNLPPALDPSFGDIDISTVQVKSCSYICYISYILFFIHGTCFYIFGQTEGSVAFPISLAPAAKSRLYHLCKWIICVCFNLQE 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3236g00004 1020 SUPERFAMILY CAD & PB1 domains 192 280 - -
Vium3236g00004 1020 Gene3D - 195 278 - -
Vium3236g00004 1020 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 196 278 - -
Vium3236g00004 1020 MobiDBLite consensus disorder prediction 452 486 - -
Vium3236g00004 1020 MobiDBLite consensus disorder prediction 567 642 - -
Vium3236g00004 1020 MobiDBLite consensus disorder prediction 669 700 - -
Vium3236g00004 1020 MobiDBLite consensus disorder prediction 625 642 - -
Vium3236g00004 1020 MobiDBLite consensus disorder prediction 336 360 - -
Vium3236g00004 1020 PANTHER OS05G0427100 PROTEIN-RELATED 168 513 - -
Vium3236g00004 1020 MobiDBLite consensus disorder prediction 567 581 - -
Vium3236g00004 1020 Pfam PB1 domain 193 276 IPR000270 GO:0005515
Vium3236g00004 1020 CDD PB1_UP2 180 276 - -
Vium3236g00004 1020 SMART PB1_new 191 278 IPR000270 GO:0005515
Vium3236g00004 1020 MobiDBLite consensus disorder prediction 655 702 - -
Vium3236g00004 1020 MobiDBLite consensus disorder prediction 331 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3236g00004 Vium-Chr3236 12871 17233 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3236g00004 768 943 MAP Kinase Kinase Kinase AT1G79570 37.430 3.17e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3236g00004 - - vum:124833616 2032.68