Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3236g00001 ATGGAGCCTAGAAATGAGGAGTTCCAGTCGGGATCTCAATCAGTAATTCAGGACCATATGGATGGCATGCAGAGTATTAGACGGCCATCTGACTATAGCACATCAGATGTTAAACCGGTCCTTAATTATTCAATACAGACGGGTGAGGAATTTGCTCTTGAATTCATGCGAGATAGGGTGAATCTCAGGAAGCCCATGTTTTCAAATGTTAATGATTCCAATTCCAATTATGCAACTGGCTGCATGGAACTGAAAGGTGTCTTAGGCATCAACCACACAGCTTCTGAAAGTGGATCAGACATTTCTATTCTATCAAAAACTGAGAAAGGTCTGACAGAGTTTAACAGACCGAGTACATCATTACATGGAGACAGAAGCAATTATGGGTCAATTCGGTCAATGCCAAGAGTTTCATTGAATCAGGAGAATAGTCGATTTGTACGTGGGTATGGGTCTTCTGTTGGTTCTGACAGCTCATCAATGATGAAGTGTCTTTGTAGCTTTGGTGGCAGAATATTACCACGACCAAGTGATGGGAAGTTAAGGTATGTTGGAGGTCAAACTCGTATTCTTCGTCTAAGAAAGGACATATCTTGGCAGGAGCTTATGCAAAAAGCATTATTAATTTATAATCTGGTTCATGTACTAAAATATCAACTTCCTGGGGAAGATCTCGATGCATTGGTATCAGTGTCGTCTGATGAGGATTTGCAGAATATGATGGAAGAATGTAATCTTCTAGAAGATAGAGAGCGCTCAAAAAAGCTTAGGCTGTTTTTGTTCTCAATGAGTGATTTGGAAGATGCTCATTTTTCTCTCAGCAGCATTAGTGATGACTCTGAGGTCCAATATGTTGTTGCTGTTAATGGCATGGACTTTGGATCAATAAACAGCTCAACCCCACTTGGTGTCAGTTTCTCAGCTGATGATCTGCATGAATTGGAAAGGCAAACTTCACAGAGAGAGACTAATAATAGAGCTGCTGTAGAATCTGTAGGTGCCAGCGCTCCCTTGACTAACAAATCTGATCCTTCATTGACTATTCATTCTTCACAAGCAGTTCTACCAAATGCCTCAAATTCTTATGAACTTGATCAACATTCTTATGGTGACCAAATGCCTCAATTTGGGGATTATAGTCGTCAATATTTTGTTCACCATGGCCTTAATTCCACTCATAGCCCTGTTGGAGAGACTTTTATTCCTATGGCTCCTCATCTGCTTAACAATCAACAAGGGGTTCAGAATGAAGACCATGTATCTAGTGGATTACAAATTCAAAATTCTCAGTTATCTGCAATGCAGGTGAAAAAGATAAGTGATAATTCAGTTAAGCAAGGGAGTGACTCTGAAAATGTTTTAACCTCAGAAACCACGTCTCCAGCTCCCTTACAAACCTCTGACAGTGGCTTAAAAAGTAATTTTCATGAAGCATCGGTTGTAGTTACCATGCCTGAGGGACATCCACCTTCATTACCTTCAACAAAAAAGGTTCAGCACAAGGATTATGAAGAGTTGTCTTCTACTTCTAGCAGTGCATTTGTTCCTGCTTATGTTGATTCCCATCCAAATGCAATTGATTTGAGTTGTCTTCATCCTCCTCCACTTCCTGAAAGAGTTTATTATTCAGAAAGAACTCCGAGGGAGCAAGTAGAGTTGCTGAATCGTTCCTCAAAGTCAGATGACACACACAGTTCTCAACTACATGTGTCAGATTTACTTTCTGATGTCAACCCAGAGGACCCAGTAACAGAATCTGGGGGCAACTTGCATCCAACTGACGAATTGGGTAATGCAGAAAAGCCCTTGCATGCAGATGGCCATACCACTGACAATGGGTTTTCCAAAAATCAAATGAGCAAACCATTGCCTGATACAAACAGTCTTATTAAGTCAAAACTATCTGAGCTCACAGACCCTGAGTTGAAGCCAGTGTTATCAAGTAATGAAGGAACTAAAGATGTTGAAACTGAAAATTATCGTAAAGATAGCCAAATAAAGCCCTTGCTTGACGAAACTGAAACCAAGACCAAAACCAAAGATGGTAAATCAAATGTTCCTACTTTGCATCATGTTTCCTCTGCTAAGCGTCTTGATGATCTAGCATCCAATCTTCCAGAGATTGATTGGGGTGAAGCCTCAGGGAAGGAATCAAATGATGGTTGTGTGGTGGAAGAACTACCTGTATCTGTAACTGGGAGTGTAACTAAAGATGTTAATCAAGATTTCCCCCAAAATGTTGTTTCCAAACAATCTCAAGGGGACATTCTTATTGACATTGATGATCGATTTCCCCGCGAATTGCTTTCAGATATGTTTTCTAAAGCAATACATGGAGAAGATCCCTCCAGTCTGCATCCATTGTCTGGAGATGGAGTAGGCTTAAGCATAAATATGGAAAATCATGAACCCAAAAGATGGTCATATTTTCATAAATTAGCACAAGGGCTTGATAACGTCTCTCTTATTGATCAAGATCATCTTGGTTTTCCACCTGGAATAGGAAAAACAGAAGATAATAGAACTCATCATGTTATGCCGCTAACAACTGATGGAGATCCCCTACATCATGAAGATTCCCATCTCAAATTTAATGAAGAAAATCCTGAGGACTTACATGTTAGGATTGAAACTGAAACTACCATTCTGAAGTCTAATTATAATCAATCCCAGCTTAAGGACAATGAAAGCATGCAGTTTGATGCTATGATGGAAAATCTAAGAATGCAAGGGTCAGAGTTTGAGGATGGCAAATTTGATGTGAAAAATAGCAACCTACCTCCAGCCCTTGATCCTTCTTTTGGAGATATTGACATTAGTACTGTGCAGGTAAAATCATGTTCTTATATATGCTACATTTCTTATATACTTTTTTTCATACACGGAACATGTTTTTATATTTTTGGGCAAACTGAAGGCTCTGTTGCCTTCCCAATAAGCCTTGCACCTGCTGCAAAGAGTAGATTATATCACTTGTGTAAATGGATAATTTGTGTATGTTTCAACTTGCAGGAATAA 3018 0.3946 MEPRNEEFQSGSQSVIQDHMDGMQSIRRPSDYSTSDVKPVLNYSIQTGEEFALEFMRDRVNLRKPMFSNVNDSNSNYATGCMELKGVLGINHTASESGSDISILSKTEKGLTEFNRPSTSLHGDRSNYGSIRSMPRVSLNQENSRFVRGYGSSVGSDSSSMMKCLCSFGGRILPRPSDGKLRYVGGQTRILRLRKDISWQELMQKALLIYNLVHVLKYQLPGEDLDALVSVSSDEDLQNMMEECNLLEDRERSKKLRLFLFSMSDLEDAHFSLSSISDDSEVQYVVAVNGMDFGSINSSTPLGVSFSADDLHELERQTSQRETNNRAAVESVGASAPLTNKSDPSLTIHSSQAVLPNASNSYELDQHSYGDQMPQFGDYSRQYFVHHGLNSTHSPVGETFIPMAPHLLNNQQGVQNEDHVSSGLQIQNSQLSAMQVKKISDNSVKQGSDSENVLTSETTSPAPLQTSDSGLKSNFHEASVVVTMPEGHPPSLPSTKKVQHKDYEELSSTSSSAFVPAYVDSHPNAIDLSCLHPPPLPERVYYSERTPREQVELLNRSSKSDDTHSSQLHVSDLLSDVNPEDPVTESGGNLHPTDELGNAEKPLHADGHTTDNGFSKNQMSKPLPDTNSLIKSKLSELTDPELKPVLSSNEGTKDVETENYRKDSQIKPLLDETETKTKTKDGKSNVPTLHHVSSAKRLDDLASNLPEIDWGEASGKESNDGCVVEELPVSVTGSVTKDVNQDFPQNVVSKQSQGDILIDIDDRFPRELLSDMFSKAIHGEDPSSLHPLSGDGVGLSINMENHEPKRWSYFHKLAQGLDNVSLIDQDHLGFPPGIGKTEDNRTHHVMPLTTDGDPLHHEDSHLKFNEENPEDLHVRIETETTILKSNYNQSQLKDNESMQFDAMMENLRMQGSEFEDGKFDVKNSNLPPALDPSFGDIDISTVQVKSCSYICYISYILFFIHGTCFYIFGQTEGSVAFPISLAPAAKSRLYHLCKWIICVCFNLQE 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3236g00001 1005 MobiDBLite consensus disorder prediction 552 566 - -
Vium3236g00001 1005 MobiDBLite consensus disorder prediction 316 345 - -
Vium3236g00001 1005 Gene3D - 180 263 - -
Vium3236g00001 1005 Pfam PB1 domain 178 261 IPR000270 GO:0005515
Vium3236g00001 1005 CDD PB1_UP2 165 261 - -
Vium3236g00001 1005 PANTHER OS05G0427100 PROTEIN-RELATED 153 498 - -
Vium3236g00001 1005 MobiDBLite consensus disorder prediction 437 471 - -
Vium3236g00001 1005 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 181 263 - -
Vium3236g00001 1005 MobiDBLite consensus disorder prediction 321 345 - -
Vium3236g00001 1005 SMART PB1_new 176 263 IPR000270 GO:0005515
Vium3236g00001 1005 SUPERFAMILY CAD & PB1 domains 177 265 - -
Vium3236g00001 1005 MobiDBLite consensus disorder prediction 654 685 - -
Vium3236g00001 1005 MobiDBLite consensus disorder prediction 640 687 - -
Vium3236g00001 1005 MobiDBLite consensus disorder prediction 552 627 - -
Vium3236g00001 1005 MobiDBLite consensus disorder prediction 610 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3236g00001 Vium-Chr3236 12865 17093 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3236g00001 753 928 MAP Kinase Kinase Kinase AT1G79570 37.430 3.13e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3236g00001 - - vum:124833616 2000.33