Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3234g00013 ATGGACGCTGCCACTTCCACGGACGAAACCACCACCACCAGCGAATCTCTTTCCCTTCCTCCCAACCAATCTCCGCCTCCTCTGATCCGCATCGAACCCGACGCTGTTTCCGGCGAGGCCGAATCCCGCAAACTTCCGTCCTCCAAATACAAAGGCGTGGTGCCGCAACCCAACGGTCGTTGGGGCGCTCAGATTTACGAGAAGCACCAGCGCGTTTGGCTCGGTACCTTCAACGAGGAAGATGAAGCCGCCAGAGCCTACGACATCGCGGCGCAGAGGTTCCGCGGGCGCGACGCCGTCACAAACTTCAAGCCTCTTGCCGGAGCAGGCGACGACGCAGAGTCCGAGTTCCTTAACTCGCATTCCAAGTCCGAGATCGTCGACATGCTGCGCAAACACACCTACGACGACGAGCTCCAGCAGAGCACACGCGGCGGAAGGCGACGCCGCGACGCCGAGGTCGCCTCGTGCGGCGCGTACGATGTGAAGGCGCGTGAGCAGCTGTTCGAGAAAACAGTCACTCCCAGCGACGTCGGCAAGCTGAATAGATTGGTTATACCGAAGCAGCACGCGGAGAAGCACTTCCCGTTGAGCAGCGGATCCGGTAGCGGAGTCTCGCCGCGCACTGTTGCAGCGGCGGCGGCCAAGGGAGTGCTGTTGAACTTCGAGGACGTTGGAGGGAAAGTGTGGCGGTTCCGTTACTCGTATTGGAATAGTAGCCAGAGCTACGTGCTTACCAAGGGATGGAGCCGGTTTGTGAAGGATAACAATCTGAGAGCCGGTGACGCGGTTCGGTTTTTCAAGTCAACCGGACCGGACCGGCAGCTTTATATAGACTGCAAGGCCAGGAGCGGTGGCGGTATTTGTGAGTTTAATAACAATAATGCTGGAGGTTTGTTTGTCCCGGTGGGACCAGTTGTTGAGCCGGTTCAGATGGTTCGGCTTTTCGGGGTGAACCTTTTGAAACTACCCGGTTCGGACGGTGTCCGGGTTGGCTACGAGGGGAAGCGGAAAGAGATGGAACTGTTTGCATTCGAATGTAGCAAGAAGTTAAAAGTAATTGGAGCTTTGTAA 1074 0.5726 MDAATSTDETTTTSESLSLPPNQSPPPLIRIEPDAVSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDAVTNFKPLAGAGDDAESEFLNSHSKSEIVDMLRKHTYDDELQQSTRGGRRRRDAEVASCGAYDVKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLSSGSGSGVSPRTVAAAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKDNNLRAGDAVRFFKSTGPDRQLYIDCKARSGGGICEFNNNNAGGLFVPVGPVVEPVQMVRLFGVNLLKLPGSDGVRVGYEGKRKEMELFAFECSKKLKVIGAL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3234g00013 357 CDD B3_DNA 168 278 IPR003340 GO:0003677
Vium3234g00013 357 Gene3D AP2/ERF domain 48 105 IPR036955 GO:0003700|GO:0006355
Vium3234g00013 357 SMART rav1_2 49 110 IPR001471 GO:0003700|GO:0006355
Vium3234g00013 357 FunFam AP2 domain-containing protein RAP2.8 48 105 - -
Vium3234g00013 357 MobiDBLite consensus disorder prediction 1 59 - -
Vium3234g00013 357 CDD AP2 48 103 IPR001471 GO:0003700|GO:0006355
Vium3234g00013 357 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 44 330 IPR044800 GO:0003700
Vium3234g00013 357 SMART B3_2 169 283 IPR003340 GO:0003677
Vium3234g00013 357 ProSiteProfiles B3 DNA-binding domain profile. 169 284 IPR003340 GO:0003677
Vium3234g00013 357 MobiDBLite consensus disorder prediction 1 19 - -
Vium3234g00013 357 SUPERFAMILY DNA-binding domain 48 104 IPR016177 GO:0003677
Vium3234g00013 357 SUPERFAMILY DNA-binding pseudobarrel domain 167 281 IPR015300 -
Vium3234g00013 357 Pfam B3 DNA binding domain 169 267 IPR003340 GO:0003677
Vium3234g00013 357 Pfam AP2 domain 48 96 IPR001471 GO:0003700|GO:0006355
Vium3234g00013 357 Gene3D - 158 287 IPR015300 -
Vium3234g00013 357 ProSiteProfiles AP2/ERF domain profile. 49 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3234g00013 Vium-Chr3234 94064 95618 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3234g00013 5 357 B3 DNA Binding Superfamily AT1G25560 56.589 5.58e-131 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Vium3234g00013 B3 1.8e-26 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3234g00013 K09287 - gmx:100789009 563.148