Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3234g00012 ATGAACCATATCTCCATGCAGAAAACATACTCTTTCTCCTGCATATCCTCGTGTGGCAGTGATAGTGCCTGCGTAGAAGCTGACGAGGTTGGCAATGAAGATTCTATTTCCCTCTCCCTCGGCCTTCCTTGCCACCACAGATCTGAAGTCCTTAACCCAAAACGCACTTCTGCTGTGCGTGGTCATCAGAAAAACCCTACCTCTGATGACCCCAGTGGTGTAACAGTTGCCCTCCACATCGGCCTTCCCACAACCGCTACCAAAACTTCTTCCACTCCGACTCATGTCCGATATTGGATCCCTACTACTCAACAAATCCTTATTGGACCCACTCAATTCTCTTGCGCAGTCTGCAACAAAACGTTCACCCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCAGAGTATAGGAAAGGGTCGGAGTCATTGAGAGGGTCAAAAGCAGGTTCTTCAATGCTGAGGCTGCCCTGCTACTGCTGTGAAGAGGGTTGCAGAAACAACATAAACTATCCAAGGTCAAGGCCACTGAAGGATTTCAGGACCCTCCAAACACAATACAAGAGGAAGCACGGAGGGAAGCCATTCGAGTGCAGGAAATGTAAGAAGGCATTTGCAGTGAGAGGTGATTGGAGAACACACGAGAAGAATTGTGGGAGGCTTTGGTTCTGCATCTGTGGTTCTGATTTCAAGCACAAGCGGTCCCTGAAAGACCATGTCCGTGCATTTGGCAATGGGCATGCTCCACACAGCTTGGGTGAAGAAAGAGGCAGTGATGAGAGTGAAATGGTGTTTTTAGTTTGA 810 0.484 MNHISMQKTYSFSCISSCGSDSACVEADEVGNEDSISLSLGLPCHHRSEVLNPKRTSAVRGHQKNPTSDDPSGVTVALHIGLPTTATKTSSTPTHVRYWIPTTQQILIGPTQFSCAVCNKTFTRFNNMQMHMWGHGSEYRKGSESLRGSKAGSSMLRLPCYCCEEGCRNNINYPRSRPLKDFRTLQTQYKRKHGGKPFECRKCKKAFAVRGDWRTHEKNCGRLWFCICGSDFKHKRSLKDHVRAFGNGHAPHSLGEERGSDESEMVFLV 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3234g00012 269 Gene3D Classic Zinc Finger 112 135 - -
Vium3234g00012 269 Gene3D Classic Zinc Finger 196 245 - -
Vium3234g00012 269 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Vium3234g00012 269 FunFam Zinc finger protein WIP2 167 249 - -
Vium3234g00012 269 SMART c2h2final6 113 135 IPR013087 -
Vium3234g00012 269 SMART c2h2final6 198 218 IPR013087 -
Vium3234g00012 269 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Vium3234g00012 269 PANTHER ZINC FINGER PROTEIN WIP2 49 254 IPR043584 GO:0003700|GO:0010468
Vium3234g00012 269 MobiDBLite consensus disorder prediction 58 72 - -
Vium3234g00012 269 MobiDBLite consensus disorder prediction 54 74 - -
Vium3234g00012 269 SUPERFAMILY beta-beta-alpha zinc fingers 113 218 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3234g00012 Vium-Chr3234 81880 83678 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3234g00012 31 256 C2H2 Transcription Factor Family AT1G13290 66.383 2.05e-114 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium3234g00012 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3234g00012 - - gmx:100784037 452.595