Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3234g00010 ATGGGGTTTCCTGACTACATCCAGGCATTGGAAGAAGAACGCCGTAAGATTCAGGTCTTCTGCAAAGAGCTTCCTCTTTCCTTCGAGCTAGTTACTCAAGCAATTGAAGCTTGCAGACAACAGTTGTCTGGCACCACTAGCGAGTATAATTTGAATGGTCAATCGGAGTGTTCGGAGCGGACAACATCATCGGAGGGACCAGTCTTGGAGGAGTTCATTCCGATCAAGAAAAGGGCATCATCATCCCCCTGTTGCGATGAAGATGACGAAGACTATGAACAGCATTCTCTCAGGCAAACGGTTTTAAATGAGAATAATAATAACAGTGATAAGAGGAAATCCGACTGGCTCAGATCTGTTCAGCTGTGGAATCCAGATCCCCCAGCTGAGGAGGATGCGACTAAGAAAGTTCCTGGGATGGAATTGAAGAGAAGTGGGAGTGGTGGTGGTGCTTTCCAGCCATTCCACAGGGAAGAAAGAGCTACAAAGGAAACTGAAACATTGTATAAAGCACCCTCTTCAACTCGGGTACCTGCTGCGAGTTCTAGCGCCGGAGAACTCACCCCAGAAAAAAATCAGAATGAGGGACAGAGAAAGCAGCGCAGATGCTGGTCTCAGGACTTACACAAGCGCTTCTTGCATGCCCTTCAGCAGCTTGGGGGTGCAGATTCTGCCACACCAAAACAAATCCGAGAGCTAATGAATGTTGATGGACTCACAAATGATGAAGTGAAAAGCCATTTACAGAAATACCGTTTGCACACCAGAAGGCCAAGTCCCTTGGTTCACAACAATTCCAGTCCACAAGCAGCGCCTTTTGTCCTTGTAGGGAACATTTTTGTTCAGTCACCAGAATATGCTGCTGTAGCTACCTCAACAGCATCAAGAGAAGTGACCACAGTTACAGTACCTGCTGGAGTTTATGCACCAGTGGCCACACATCCTAAGCCTGTTTCACAACCATCAGCCGATTCAATTAAGAAGCCACAGTTTAAGAAATTTAAGCATTCTGAACATTCAAATTCAGATGAAAGGGGTCATCACAGTGAAGGAGCCGTTCATTCAAATTCCCCTACCTCATCCTCCTCTACACACACCTCTGCTTCCCCTGGTTATTAA 1119 0.4647 MGFPDYIQALEEERRKIQVFCKELPLSFELVTQAIEACRQQLSGTTSEYNLNGQSECSERTTSSEGPVLEEFIPIKKRASSSPCCDEDDEDYEQHSLRQTVLNENNNNSDKRKSDWLRSVQLWNPDPPAEEDATKKVPGMELKRSGSGGGAFQPFHREERATKETETLYKAPSSTRVPAASSSAGELTPEKNQNEGQRKQRRCWSQDLHKRFLHALQQLGGADSATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPLVHNNSSPQAAPFVLVGNIFVQSPEYAAVATSTASREVTTVTVPAGVYAPVATHPKPVSQPSADSIKKPQFKKFKHSEHSNSDERGHHSEGAVHSNSPTSSSSTHTSASPGY 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3234g00010 372 Pfam Myb-like DNA-binding domain 201 252 IPR001005 -
Vium3234g00010 372 Gene3D - 198 256 - -
Vium3234g00010 372 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 5 330 IPR044787 GO:0003700|GO:0006355
Vium3234g00010 372 SUPERFAMILY Homeodomain-like 197 257 IPR009057 -
Vium3234g00010 372 FunFam Myb family transcription factor 198 256 - -
Vium3234g00010 372 MobiDBLite consensus disorder prediction 328 351 - -
Vium3234g00010 372 MobiDBLite consensus disorder prediction 167 191 - -
Vium3234g00010 372 MobiDBLite consensus disorder prediction 122 202 - -
Vium3234g00010 372 MobiDBLite consensus disorder prediction 352 372 - -
Vium3234g00010 372 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 254 IPR006447 GO:0003677
Vium3234g00010 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 196 256 IPR017930 -
Vium3234g00010 372 MobiDBLite consensus disorder prediction 311 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3234g00010 Vium-Chr3234 67213 69516 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3234g00010 5 249 G2-like Transcription Factor Family AT1G25550 54.150 7.56e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium3234g00010 Myb_DNA-binding 2.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3234g00010 - - gmx:100796683 592.423