Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3229g00010 ATGCAAATGTCTCAGAAACATAATATGTCCTACGAGGCTGTCCAAAATCTTGGGTCATGCTGCTTCCTACAAAGTGAGAACCTAGACTACTATTCATCCTCTGATAACAGTAGCCATGCAACCTACCCTTCTGTTCGTACTTTAGAGCAATATTGCACCCTGGAATCTTCTACAAAGAACATTTTTCCTTCCCTAAATTCCCCAACTACTGTCAGCTTCTCACCTAACCATAGCCCACTCTCAAAGCTACAACCAAAATCATATGTGTTGAGTTCACATAGTTCTCTTGAAATTACTAATGACTCAATAGAAAATGAATCATGTTTGACGCATAATGACAATGAGCTGAGGCACAAGATAAGAGAGCTTGAAAGTGCTATGTTGGGACATGATGCAGATATTCTGGATATGTATGATACTGTAATTCCGGAGGAATCTGATTCATTTTTGCTAGAGGCAGAAAGGTGGAAGAAAATGATGGAGATGATATCTAGAGGGGATTTGAAAGAGATGCTTTGTGCATGTGCAATAGCAGTGGCAGGAAATGATATGGAGACAACTGAATGGTTGATGTCAGAGTTACGCAAAATGGTCTCAGTTTCTGGCAACCCAATCCAACGATTGGGGGCATACATGTTGGAGGCTCTTGTTGCAAGACTGGCCTCTTCAGGAAGCACAATCTACAAAGCCTTGAAATGTAAAGAGCCTACTGGTAGGGAACTCCTTTCACACATGCACCTACTTTATGAAATCAGCCCATATCTCAAATTTGGTTACATGTCTGCAAATGGAGCTATTGCTGAAGTCATGAAGGGGGAAACTGAAGTCCACATAATTGATTTTCAGATAAACCAGGGAATACAATGGGTGAGCCTAATCCAAGCTCTTGCTGGCAGACATGGAGGACCCCCCAAGATCAGAATAACAGGTTTTGATGACTCCACTTCAGCTTATGCCAGGGAAGGAGGTCTTGAAATTGTGGGAGAAAGGTTGTCAGCACTTGCACAATCATATAATGTACCCTTTGAGTTCCGTGCCTTAGAAGTTGCTCCCACTGAGGTTGAAATTAAAGACCTTGAACTTCGACCTGGTGAAGCTATTGCTGTGAATTTTGCCATGATGCTGCACCATCTTCCAGATGAAAGTGTGGATGGTCAGAACCATCGTGGCCGGTTGTTGAGACTCGCAAAGTGTTTGTCTCCAAAGATCGTGACACTAGTTGAGCAAGAATCACATACCAGCAACCTCCCATTCTTTCCCCGTTTTGTTGAGACAATGAACTACTACTTGGCTATTTTCGAATCAATTGATGTTGCTCTTCCAAGGGATAACAAAGAAAGGATTAACGTGGAACAGCACTGTTTGGCTCGTGAAGTTGTCAACTTAGTAGCATGTGAAGGGGCAGAAAGAGTGGAACGTCACGAGCTTCTCAAGAACTGGAGATCACGTTTCACCATGGCTGGATTCTCACCATATCCATTGAACTCCTTTATTACCAGTTCGATTATAAATCTTCAGCAAAGCTACCAAGGACATTACACTCTAGAAGAGAGAGATGGAGCTCTATGTCTTGGTTGGATGAATCAAGCTCTTATTACTTCTTGTGCTTGGAGGTGA 1617 0.4255 MQMSQKHNMSYEAVQNLGSCCFLQSENLDYYSSSDNSSHATYPSVRTLEQYCTLESSTKNIFPSLNSPTTVSFSPNHSPLSKLQPKSYVLSSHSSLEITNDSIENESCLTHNDNELRHKIRELESAMLGHDADILDMYDTVIPEESDSFLLEAERWKKMMEMISRGDLKEMLCACAIAVAGNDMETTEWLMSELRKMVSVSGNPIQRLGAYMLEALVARLASSGSTIYKALKCKEPTGRELLSHMHLLYEISPYLKFGYMSANGAIAEVMKGETEVHIIDFQINQGIQWVSLIQALAGRHGGPPKIRITGFDDSTSAYAREGGLEIVGERLSALAQSYNVPFEFRALEVAPTEVEIKDLELRPGEAIAVNFAMMLHHLPDESVDGQNHRGRLLRLAKCLSPKIVTLVEQESHTSNLPFFPRFVETMNYYLAIFESIDVALPRDNKERINVEQHCLAREVVNLVACEGAERVERHELLKNWRSRFTMAGFSPYPLNSFITSSIINLQQSYQGHYTLEERDGALCLGWMNQALITSCAWR 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3229g00010 538 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 117 532 IPR005202 -
Vium3229g00010 538 Pfam GRAS domain family 169 538 IPR005202 -
Vium3229g00010 538 ProSiteProfiles GRAS family profile. 159 538 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3229g00010 Vium-Chr3229 59426 62627 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3229g00010 44 538 GRAS Transcription Factor Family AT1G50600 58.882 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium3229g00010 GRAS 4.6e-128 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3229g00010 - - gmx:100779977 937.176