Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3229g00006 ATGGCTGCTTCTGTGTCTCTCTATCCCTATAAACCCCTGCTATACTTTTCGACTCCTTCATGTTTTCAGTCTCAATTTCGGAACTTGGAGAGAGGGCATTTGGGTTCTGCAAGGTTGAAGAGTATAGTGAAACTTGCAGCACATTCAAATCCGAAAATTCTCAAGACCAACAGGAAGTCAAAGTATGGAGAGGCACTGTCGCTGTACGATAGTGATGAAGACGATGAAGAAACTGACGAGGAGGAGGACGACGAAGATGATGATGATTGGCTTTCTGATGAGGAATTTGCTGAGCCTGCTAAATTTGATGTTAGGAACAAGAGATTGAAGTCGAAGACAGTTAAAGGAAAGAATAAAGAGCAGGAGTGGGAGTGGGGTTTGAGATCTTTGGACAACGAACATAGCATTAGATTGCCTAGAAGTGAGAGAGTGGCATCCTTACAACGAAATGAGAGTGGAAAGGTACCAAATGGTGATACGGTTAGTAGAAATGTAAAGAACAAAAAATATCCGCGGTTGTCCGAAGAGATTCCTTTGGACTTGAAATGGTTACCACTTCTTGATTACCTGAGCACCTTTGGAATGAAGGAGTCACACTTTATCCAAATATATGAGAGGCACATGCAAGCACTTCAAATTAATGTTGGTTCCGCACAGGAAAGGTTAGAATACTTAATGAGTGTTGGTGTTAAACATAGAGATGTAAGAAGAATCCTTTTGAGGCAGCCACAAATTCTTGAGTATACAGTGGAGAACAATTTGAAGTCTCGTGTTGCATTCTTGAGGGGCCTGGGCATACCGAATTCTAGAATGGGGCAAATCATTGCTGCTGCTCCGTCTTTGTTTTCTTACAGTGTTGAGAATTCATTAAAACCTACAGTTAGATATTTAGTTGAGGAAGTAGGCATCAAGGAAAAAGATTTGGGTAAGGTCATTCAGCTTAGTCCCCAAATTCTTGTGCAAAGAATTGACATTTCATGGAATATGCGTTATATGTTTCTTACCAAGGAGTTGGGTGCACCCAGGGATAACATTGTGAAGATGGTGACAAAACATCCCCAACTTCTCCATTACAGCATAGATGATGGATTACTTCCAAGAATAAATTTCTTAAGGAGCATAGGAATGAAAAATTCAGATATCTTGAAAGTATTGACTAGCCTTACGCAGGTGCTATCTCTGTCATTGGAGGAAAATCTAAAGCCCAAATATTTGTACTTGGTAAATGAACTTAACAATGAGGTGCAATCCTTGACCAAGTATCCAATGTATCTTAGTTTATCCTTGGACCAGAGAATTCGTCCTCGTCATAGGTTCTTAGTTTCCCTAAAGAAAGCTCCAAAAGGACCATTTCCCCTTGGATCTCTTGTACCAACTGATGAATGTTTTTGCGAACAGTGGGCTGGAACAAGTTTGGATAAATATTTGGCATTCCGTCAGAGATTATTACTTCAAAAGTTTGCTGAGAAATATGAAAGAAAAATGTGA 1488 0.3999 MAASVSLYPYKPLLYFSTPSCFQSQFRNLERGHLGSARLKSIVKLAAHSNPKILKTNRKSKYGEALSLYDSDEDDEETDEEEDDEDDDDWLSDEEFAEPAKFDVRNKRLKSKTVKGKNKEQEWEWGLRSLDNEHSIRLPRSERVASLQRNESGKVPNGDTVSRNVKNKKYPRLSEEIPLDLKWLPLLDYLSTFGMKESHFIQIYERHMQALQINVGSAQERLEYLMSVGVKHRDVRRILLRQPQILEYTVENNLKSRVAFLRGLGIPNSRMGQIIAAAPSLFSYSVENSLKPTVRYLVEEVGIKEKDLGKVIQLSPQILVQRIDISWNMRYMFLTKELGAPRDNIVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNSDILKVLTSLTQVLSLSLEENLKPKYLYLVNELNNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLGSLVPTDECFCEQWAGTSLDKYLAFRQRLLLQKFAEKYERKM 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3229g00006 495 PANTHER CGI-12 PROTEIN-RELATED 184 467 IPR003690 GO:0003690|GO:0006355
Vium3229g00006 495 Pfam mTERF 186 442 IPR003690 GO:0003690|GO:0006355
Vium3229g00006 495 MobiDBLite consensus disorder prediction 145 164 - -
Vium3229g00006 495 FunFam Transcription termination factor MTERF9, chloroplastic 247 482 - -
Vium3229g00006 495 MobiDBLite consensus disorder prediction 69 92 - -
Vium3229g00006 495 MobiDBLite consensus disorder prediction 141 166 - -
Vium3229g00006 495 Gene3D Transcription termination factor 3, mitochondrial 245 482 IPR038538 -
Vium3229g00006 495 Coils Coil 201 221 - -
Vium3229g00006 495 SMART mt_12 236 267 IPR003690 GO:0003690|GO:0006355
Vium3229g00006 495 SMART mt_12 382 414 IPR003690 GO:0003690|GO:0006355
Vium3229g00006 495 SMART mt_12 201 231 IPR003690 GO:0003690|GO:0006355
Vium3229g00006 495 SMART mt_12 415 446 IPR003690 GO:0003690|GO:0006355
Vium3229g00006 495 SMART mt_12 272 304 IPR003690 GO:0003690|GO:0006355
Vium3229g00006 495 SMART mt_12 346 377 IPR003690 GO:0003690|GO:0006355
Vium3229g00006 495 SMART mt_12 309 341 IPR003690 GO:0003690|GO:0006355
Vium3229g00006 495 MobiDBLite consensus disorder prediction 65 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3229g00006 Vium-Chr3229 44811 47716 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium3229g00006 mTERF 7.2e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3229g00006 K15031 - gmx:102660933 821.231