Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3228g00011 ATGGCTGGGGATGGGAGTGTCGTCCCTGCAGACCCAGGGGCAATGACAGTTGTAAAGAAGAAGACACAGTCTTCAAGGAGTTGGATTCTGATTGATGCTTCTGGACATGGTTCATTGCTCGACGTGGACAAATATGCAATCATGAATCGGGTTCAGATTCATGCGCGTGATCTCAGAATCCTTGATCCCTTGCTCTCTTATCCCTCCACCATTCTCGGTCGTGAGAAGGCTATTGTTCTTAACTTGGAGCATATCAAAGCAATTATCACAGCTGAAGAGGTATTGCTGAGAGATCCAACAGATGAAAATGTAATCCCGGTTGTCGAGGAACTGCAGAGGCGGTTGCCTCGATTAAGTGCCGGTCTTCAACAGCAAGGAGATAGTAAAGAGTATCTTGGAGGCCAAAATGACGCTGAAGCAGCTGAAGAAGATGAGTCACCCTTTGAATTTCGGGCACTGGAGGTTGCTTTAGAAGCCATTTGTAGTTTTCTTGCTGCACGTACAACAGAGTTGGAGATGGCTGCTTATCCTGCATTAGATGAACTTACCTCCAAGATTAGTAGTCGTAATTTGGACAGAGTTCGTAAACTGAAGAGTGCAATGACAAGGCTGACTGCTAGAGTCCAAAAGGTCAGAGACGAGCTTGAACAATTGCTGGATGATGATGATGATATGGCTGACCTATACCTGTCAAGAAAAGGGGGTTCATCATCACCAGTCAGTGGATCAGGTGCTGCAAATTGGTTTGCTGCCTCCCCTACCATTGGATCAAAGATATCTAGAGCCAGTAGAGCAAGTCTAGCAACAGTTCGTTTAAATGAAAATGATGTGGAAGAGCTGGAAATGTTACTAGAGGCTTATTTTAGTGAAATAGATCACACTTTGAACAAATTAACCACGCTGCGAGAGTACATTGATGATACTGAAGATTATATTAATATTCAACTTGACAACCATCGTAATCAGCTGATTCAGCTAGAGCTCTTTCTTAGCTCTGGAACTGTTTGTCTATCTTTCTACGCTTTGGTAACCGCTATATTTGGCATGAATATCCCATATACTTGGAACGAAGACCATGGTTACATGTTCAAATGGGTAGTTATTACCGCAGGAGTATTTTGTGCTTTGACGCTTGTCACGATTACTGCTTATGCTCGCAAAAAGGGATTAATTGGATCTTGA 1182 0.4332 MAGDGSVVPADPGAMTVVKKKTQSSRSWILIDASGHGSLLDVDKYAIMNRVQIHARDLRILDPLLSYPSTILGREKAIVLNLEHIKAIITAEEVLLRDPTDENVIPVVEELQRRLPRLSAGLQQQGDSKEYLGGQNDAEAAEEDESPFEFRALEVALEAICSFLAARTTELEMAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKGGSSSPVSGSGAANWFAASPTIGSKISRASRASLATVRLNENDVEELEMLLEAYFSEIDHTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSFYALVTAIFGMNIPYTWNEDHGYMFKWVVITAGVFCALTLVTITAYARKKGLIGS 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3228g00011 393 Pfam CorA-like Mg2+ transporter protein 267 380 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vium3228g00011 393 Gene3D Magnesium transport protein CorA, transmembrane region 106 323 - -
Vium3228g00011 393 Gene3D - 14 99 - -
Vium3228g00011 393 Coils Coil 194 221 - -
Vium3228g00011 393 CDD Mrs2_Mfm1p-like 28 390 IPR039204 -
Vium3228g00011 393 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 329 380 IPR045863 -
Vium3228g00011 393 FunFam Magnesium transporter MRS2-1 16 99 - -
Vium3228g00011 393 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 16 391 IPR039204 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3228g00011 Vium-Chr3228 96313 100927 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3228g00011 1 366 MRS2 Gene Family AT5G64560 80.707 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3228g00011 K16075 - gmx:100810239 685.641