Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3228g00009 ATGACAAGGGAACTCATGAAGGTCAACTTGAGGAAGCTCTCCGAAGCCGTCACATGTTATTTGTGCAATAAATGGTTGAAAAACGCAGCCACAATAACAGAATGCTGTCATAGCTTTTGCAGGGAATGTATAGAAAAGAAGTTAATAGATGAGAAATTAAATCATTGTCCGGTTTGCAATACAGACTTGGGTTGTTCTCCACTCGACAAATTAAGGTCAGATACTCGTAAGCAAGAATTGAGGGACAAAATTTTCCCATTTCAAGATGAAAATGATGAGGAACCTGCCGCCAAATTGTTAGCCAAAATAAAGAAGAATTTAGTTTCTTCATTAAAACCCAATAGAGAAATATCCAAAGCTGGTTTTAGAAAAGTTGCCATTGCCGAAGAAGCAGATATTTCATCTCCCAAACTTGATAAAGTGGAAGGTGATAAGGAAGATGAAAACCAGGGTGATGCTGAATTTGGGGAAGAAGGCGCTACAATTGGATCCGCTAGAAGAGCGAAAGCTGCGGCAAGAATAAAATTCATTTGCTCTGCACAACCTCCGGGACAAGAAAAGATAGAGGGTGATCAGCCTCGAGTTGAAACTTCCAGCGGAACTCTCAAAATCAGAATTCCGAATCTTTCAAAACCAAATACTGAGTTAAGGAATGAAAAGGCTGACATGTTTGAGCCAATAAATAGCCAGGTGGGAGCTGGAAGAAAACGCAAGTCCCGTAGTAATTCCACCATGCAAGAAAATGGTGTCACTTCAGTACTTGTGCACTCTAATGACGATGACCCTCAGGTTGGTATGGTCAAAATCGACAACCATACTCACAAAACTAATGGTAACCACAACGAGTCAATTCCTTCAAGCTCAGATTCGGTAAAACCTATTGTTAGCACCCGAGAAAAAAGACCAAAAATCTCGGAGGACTTGAATTTTCCAGCACCAGCTGAAACTGATTCCGACAGTGAAAGCAGCAAAGACTTTGGTCCAATCTGGTTCTGCCTGGTTGCTGCAGAAGAGAATAAAGGAAGTGCACCATTGCCACAACTATCTTCGTGCTACCTACGAGTCAAGGATGGCAGTGTAACTGTTTCCTACATTAAAAAGTATCTCGTGAAGAAGCTTGGTCTTGCTAGCGAAACTGAGGTGGAGATCACATTACAAGGGCAGCCAGTTTTATCTTCATGGCAACTGAACAGCTTAGTAGACATCTGGTTGCAAACTGTGCCAAAGAACGAGATTCTGACATCTTTTGGAAGTTCAGCCAAGGATTTTATCATGGTTCTTTCGTATGGTCGAAAGGCTTAA 1302 0.4155 MTRELMKVNLRKLSEAVTCYLCNKWLKNAATITECCHSFCRECIEKKLIDEKLNHCPVCNTDLGCSPLDKLRSDTRKQELRDKIFPFQDENDEEPAAKLLAKIKKNLVSSLKPNREISKAGFRKVAIAEEADISSPKLDKVEGDKEDENQGDAEFGEEGATIGSARRAKAAARIKFICSAQPPGQEKIEGDQPRVETSSGTLKIRIPNLSKPNTELRNEKADMFEPINSQVGAGRKRKSRSNSTMQENGVTSVLVHSNDDDPQVGMVKIDNHTHKTNGNHNESIPSSSDSVKPIVSTREKRPKISEDLNFPAPAETDSDSESSKDFGPIWFCLVAAEENKGSAPLPQLSSCYLRVKDGSVTVSYIKKYLVKKLGLASETEVEITLQGQPVLSSWQLNSLVDIWLQTVPKNEILTSFGSSAKDFIMVLSYGRKA 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3228g00009 433 Gene3D - 309 415 - -
Vium3228g00009 433 MobiDBLite consensus disorder prediction 234 248 - -
Vium3228g00009 433 SMART ring_2 19 59 IPR001841 -
Vium3228g00009 433 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Vium3228g00009 433 MobiDBLite consensus disorder prediction 229 248 - -
Vium3228g00009 433 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Vium3228g00009 433 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Vium3228g00009 433 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 4 432 IPR044807 GO:0004842
Vium3228g00009 433 MobiDBLite consensus disorder prediction 278 293 - -
Vium3228g00009 433 MobiDBLite consensus disorder prediction 137 161 - -
Vium3228g00009 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 110 IPR013083 -
Vium3228g00009 433 MobiDBLite consensus disorder prediction 255 323 - -
Vium3228g00009 433 MobiDBLite consensus disorder prediction 263 277 - -
Vium3228g00009 433 SUPERFAMILY RING/U-box 12 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3228g00009 Vium-Chr3228 75766 79549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3228g00009 5 356 C3H Transcription Factor Family AT2G30580 27.520 3.36e-27 109