Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3228g00002 ATGGTCCGAGCTCCTTGTTGTGAAAAGATGGGATTGAAGAAGGGTCCTTGGGCTCCCGAGGAAGATCAAATCCTCACTTCTTACATCCAAAAACATGGCCATGGCAATTGGCGTGCCCTCCCAAAACAAGCAGGCCTGTTAAGATGTGGAAAAAGTTGCAGACTGCGATGGATTAACTATTTGAAGCCTGATATCAAGAGAGGGAATTTCACATCTGAAGAAGAAGAAACTATCATTAAGCTGCATGAGATGCTGGGTAACAGGTGGTCGGCAATTGCAGCAAAATTGCCCGGAAGAACTGACAACGAAATAAAAAATGTGTGGCACACCAATTTGAAGAAGAGGTTGCTGAATTCAAATTCCAGAAGAGTCACAAAGCCAAAAATCAAACGTTCTGATTCCAATTCCAGCATCATAACTGAATCAGAAGCTGCCAATTTTAATTTCAGAGAAATGGATTCAACATCTGCATGCACCACTTCTAGTGATTTTTCATCGGTCACAGTTGGTGAAAGCAAAAATATCAAGTGTGAAGACATAGAGTCTCTAGAGACAATGCCCGTGATTGACGAGAGTTTTTGGTCAGAACCTGCAATTGATGAAGCACCCTCCATGTCATCACAATCCATGACAATCTCAAATCAGATGCCATTTCAATACCCTTTTACTAACTATGAGGAAACTTTCCCGCAGAGTCATGCTTATGATTCAAACTTTGATGACGGCATGGATTTCTGGTATGACATATTCACCAGGACTGCCGATTCCACAGAATTGCCAGAGTTCTGA 789 0.4208 MVRAPCCEKMGLKKGPWAPEEDQILTSYIQKHGHGNWRALPKQAGLLRCGKSCRLRWINYLKPDIKRGNFTSEEEETIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTNLKKRLLNSNSRRVTKPKIKRSDSNSSIITESEAANFNFREMDSTSACTTSSDFSSVTVGESKNIKCEDIESLETMPVIDESFWSEPAIDEAPSMSSQSMTISNQMPFQYPFTNYEETFPQSHAYDSNFDDGMDFWYDIFTRTADSTELPEF 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3228g00002 262 CDD SANT 69 112 IPR001005 -
Vium3228g00002 262 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium3228g00002 262 FunFam Myb transcription factor 11 67 - -
Vium3228g00002 262 CDD SANT 16 61 IPR001005 -
Vium3228g00002 262 SMART sant 13 63 IPR001005 -
Vium3228g00002 262 SMART sant 66 114 IPR001005 -
Vium3228g00002 262 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium3228g00002 262 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vium3228g00002 262 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium3228g00002 262 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 203 - -
Vium3228g00002 262 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Vium3228g00002 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vium3228g00002 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium3228g00002 262 Gene3D - 69 140 - -
Vium3228g00002 262 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3228g00002 Vium-Chr3228 21799 24214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3228g00002 1 262 MYB Transcription Factor Family AT2G31180 50.000 8.14e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium3228g00002 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3228g00002 K09422 - gmx:100807569 460.685