Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3228g00001 ATGGGGCAAGGGCAATTCCAAAGACGAGTTGCTCTACCAAGCAAGTCAGTTATGGGGAACAACGAAGGAATCAAAAGCCTTCACAGAGACGGAGCAGGCCTTGAGTGGAGGGACAAAGATGCGAAGACCCCCTTGATTGTTGCTTGTATGAATCCTCATCTTTATAATGTTGCGAAAACTTTGATAGAACTTGGAGCCAATGTCAATGCATATCGTCCTGGTCGTCATGGCGGGACTCCGTTGCATCATGCAGCTAAAAGGGGCTTTGAAAGTATTATTAAGTTACTTCTTGTGCATGGCGCTAATCGAATACTAAATGATGATTGTCTAACTGCTCTGGAGGTTGCCAGAGCCAAAGGACATGGTAGTGCTGTTCGTACAATTGAGTTGTTAAATGATGATTGTTGGCTTGCAAGTCATCTGTGCTTGTTCTCGGGTGGTGACGCGAGCTTTCATGGACCTGGGTTTCTGGAAGTAGTAGCTCCTCAGTTGTTATCGAGAAAAGTTTGGGTGGTTGTTTTACCAGTGGGCTCCCGAACTCTTACCAAACCTTACAAGTTGGAGGAGCTTGCCATATATTCTAATATGCAGGATGCACAACCACGTACAGTTATTGCACTGTGGAAGGCCAATTTACATGAACCAATACACCAGTCTGATCCGTCAGTTACCAATGTTGATCAAACTACTAAAACACGTGTTAGACTTGGGCCTGCAAGTGAGAATGACAAGCAACAAATTACATTTTTTTCTAATGCTTGCAAAGGAATTCCTCAGGCAAGTCCGGCATTCTTGCAAAACAATGCGCCTACAGGTCCACCCACAGCGCCACCAGCTGCAGAAGACACAGAGTTAGCTATGGCCATCAATGCATCCCTTCAGTCTGCCATCCAGGAGAGGCCATCCTTTCCTCATACACAACCAAACTCTGACGCAAGCTCTTCAAGCACTGCAGTGAATACAGGCAATCATGGTTTTCTTGGCACACCAAATTCAAATACAAGTGAAAATGAGTTGGTGCAAGAAACTAAAACTGGTGGCAATGGTGATCACCACCAAGTCAGTCATGCTCGGGGAATTGGATTTCAATCATGGCTCCACCATATCGAAAGATTAATAGGGAGAGAAGGAAAAAATGCAAGTGGAAGTGGCTCATCATGTGTGATATGTTTAGATGCTCCAGCAGAAGGGGCGTGCATTCCCTGTGGTCATGTTGCTGGATGCATGTCTTGCTTGAACGAGGTGAAATCAAAGAAATGGGGTTGCCCTGTGTGTCGAGGCTAA 1284 0.4548 MGQGQFQRRVALPSKSVMGNNEGIKSLHRDGAGLEWRDKDAKTPLIVACMNPHLYNVAKTLIELGANVNAYRPGRHGGTPLHHAAKRGFESIIKLLLVHGANPXILNDDCLTALEVARAKGHGSAVRTIELLNDDCWLASHLCLFSGGDASFHGPGFLEVVAPQLLSRKVWVVVLPVGSRTLTKPYKLEELAIYSNMQDAQPRTVIALWKANLHEPKXHQSDPSVTNVDQTTKTRVRLGPASENDKQQITFFSNACKGIPQASPAFLQNNAPTGPPTAPPAAEDTELAMAINASLQSAIQERPSFPHTQPNSDASSSSTAVNTGNHGFLGTPNSNTSENELVQETKTGGNGDHHQVSHARGIGFQSWLHHIERLIGREGKNASGSGSSCVICLDAPAEGACIPCGHVAGCMSCLNEVKSKKWGCPVCRG 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3228g00001 429 Gene3D - 13 151 IPR036770 -
Vium3228g00001 429 ProSiteProfiles Ankyrin repeat region circular profile. 40 70 - -
Vium3228g00001 429 SMART ring_2 389 427 IPR001841 -
Vium3228g00001 429 SUPERFAMILY Ankyrin repeat 16 132 IPR036770 -
Vium3228g00001 429 Pfam Zinc finger, C3HC4 type (RING finger) 387 428 - -
Vium3228g00001 429 PANTHER ROLLING PEBBLES, ISOFORM B 17 271 - -
Vium3228g00001 429 MobiDBLite consensus disorder prediction 262 358 - -
Vium3228g00001 429 SUPERFAMILY RING/U-box 388 428 - -
Vium3228g00001 429 ProSiteProfiles Ankyrin repeat region circular profile. 76 102 - -
Vium3228g00001 429 ProSiteProfiles Ankyrin repeat profile. 76 108 IPR002110 GO:0005515
Vium3228g00001 429 MobiDBLite consensus disorder prediction 290 352 - -
Vium3228g00001 429 ProSiteProfiles Ankyrin repeat profile. 40 73 IPR002110 GO:0005515
Vium3228g00001 429 SMART ANK_2a 40 70 IPR002110 GO:0005515
Vium3228g00001 429 SMART ANK_2a 76 105 IPR002110 GO:0005515
Vium3228g00001 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 372 429 IPR013083 -
Vium3228g00001 429 Pfam Ankyrin repeats (many copies) 61 117 IPR002110 GO:0005515
Vium3228g00001 429 ProSiteProfiles Zinc finger RING-type profile. 389 428 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3228g00001 Vium-Chr3228 22 4740 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3228g00001 249 428 C3H Transcription Factor Family AT3G06140 24.500 3.89e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3228g00001 - - gmx:100789309 617.846