Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3227g00002 ATGAAAAACTCTGAGGCAACAACACATGCTGGTATGGAGATAGAAGCAACAGCTAGGCCTTCTGGAAATGGTTCCACCCTACCAGGGTTGAGTCCTCTCAGTGAGACCCTTTGGAGAGAGAAGGCTAACTCAGAGATCATTGGAGATGTTTCAGCAAGACTCACATGGAAGGATCTGACCGTGATGGTCACTCTCAGCAACGGTGAGACACAAAATGTTTTGGAGGGTCTAACTGGTTATGCTGAACCAGGAACCTTCACTGCTCTCATGGGGCCCTCAGGTTCTGGAAAATCTACTCTTCTTGATGCACTTTCCAGTCGCCTAGCTGCAAATGCCTTTCTTTCAGGCACCATCCTTCTCAATGGACGCAAAGCCAAACTCTCTTTTGGCACTGCAGCTTATGTGACACAAGATGATAACTTGATCGGTACCCTAACAGTGAGGGAGACGATATCATATTCAGCTCGTTTGCGTTTGCCTGATAACATGCCATGGGCAGATAAGAGAGCATTGGTGGAGAGCACCATTGTGGCAATGGGACTGCAAGATTGTGCAGACACAGTGATTGGAAATTGGCATTTGCGGGGGATCAGTGGTGGGGAGAAGAGAAGAGTTAGCATTGCCTTGGAAATCTTGATGAGACCAAGGTTGCTTTTTCTTGATGAGCCAACCAGTGGACTTGACAGTGCTTCAGCATTCTTTGTGACTCAGACACTACGTGCCTTGGCAAGGGATGGGAGAACCGTGATAGCCTCTATTCATCAACCTAGCAGTGAAGTGTTTGAGTTATTTGACCAATTGTACTTGCTTTCTAGTGGCAAAACTGTTTATTTTGGACAGGCTTCAGAGGCATATGAGTTCTTTGCACAAGCTGGTTTCCCTTGTCCTGCTTTGAGGAACCCTTCTGATCATTTCCTCAGGTGCATCAATTCTGACTTTGACAAAGTCAAGGCCACTCTCAAAGGGTCCATGAAACTGAGGTTTGAGGGAAGCGATGATCCTTTGGACAAGATCACTACTGCCGAAGCAATCAGAACTCTTATTGACTTCTACCGAACTTCTCAGCACTCTTATGCCGCAACACAAAAAGTGGATGAGATATCCAAAGTTAAGGGAACAGTGCTTGAAGCTGGAGGAAGTGAGGCTAGTTTCTTGATGCAGTCTTACACTTTAACCAAACGTTCCTTCATCAACATGTCAAGGGACTTTGGCTACTACTGGCTTAGGCTTGTTATCTACATTGTGGTCACTATCTGTATTGGAACCATTTATTTGAATGTGGGGACAGGCTACAACTCTATTCTGGCCAGAGGTTCTTGTGCATCTTTTGTCTTTGGTTTTGTGACCTTCATGTCAATTGGTGGATTCCCTTCATTTGTTGAAGACATGAAGGTTTTCCAAAGGGAGAGGCTTAATGGTCACTATGGTGTCACTGCATTTGTCATCAGCAACACATTATCTGCAATGCCCTTCCTGATTTTGATCACTTTTCTCTCTGGAACAATCTGTTACTTCATGGTTCGCCTACACCCTGGCTTTTGGCATTACCTCTTCTTTGTGCTGTGCCTTTATGCCAGTGTCACAGTGGTTGAAAGCTTAATGATGGCAATTGCCAGCATTGTCCCCAACTTCCTCATGGGCATCATTATTGGAGCAGGAATTCAGGGCATATTCATGTTGGTCTCAGGCTACTTTAGGCTTCCACATGATATCCCAAAGCCAGTCTGGCGTTACCCAATGTCATACATCAGTTTCCACTTCTGGGCACTGCAGGGTCAATACCAGAATGATTTGAGGGGCTTGATATTTGACAACCAGACACCAGAGCTTCCAAAGATACCAGGAGAATACATCTTGGAAAAAGTGTTCCAAATAGATGTGAACAGATCGAAGTGGATTAACCTGAGTGTGATCTTCAGCATGATTGTGATCTACCGCATTATATTCTTTATCATGATAAAAATAAACGAAGATGTGACACCATGGGTGAGAGGGTACATGGCTAGAAGGAGAATGCAGCAGAAGAGTGGAGCACAGAACACAACTATTGCACCTGATGTTCTCACTCAGTCACCATCTCTCAGAACCTATGTCTCCCCTCCAACAAAATGA 2112 0.4493 MKNSEATTHAGMEIEATARPSGNGSTLPGLSPLSETLWREKANSEIIGDVSARLTWKDLTVMVTLSNGETQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSGTILLNGRKAKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDNMPWADKRALVESTIVAMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSSGKTVYFGQASEAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEGSDDPLDKITTAEAIRTLIDFYRTSQHSYAATQKVDEISKVKGTVLEAGGSEASFLMQSYTLTKRSFINMSRDFGYYWLRLVIYIVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVISNTLSAMPFLILITFLSGTICYFMVRLHPGFWHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLRGLIFDNQTPELPKIPGEYILEKVFQIDVNRSKWINLSVIFSMIVIYRIIFFIMIKINEDVTPWVRGYMARRRMQQKSGAQNTTIAPDVLTQSPSLRTYVSPPTK 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3227g00002 703 Gene3D - 48 292 IPR027417 -
Vium3227g00002 703 SMART AAA_5 83 254 IPR003593 GO:0016887
Vium3227g00002 703 CDD ABCG_EPDR 51 279 - -
Vium3227g00002 703 MobiDBLite consensus disorder prediction 1 32 - -
Vium3227g00002 703 Pfam ABC-2 type transporter 387 593 IPR013525 GO:0016020|GO:0140359
Vium3227g00002 703 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 54 297 IPR003439 GO:0005524
Vium3227g00002 703 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 43 675 - -
Vium3227g00002 703 Pfam ABC transporter 76 225 IPR003439 GO:0005524
Vium3227g00002 703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 291 IPR027417 -
Vium3227g00002 703 FunFam ABC transporter G family member 11 48 291 - -
Vium3227g00002 703 ProSitePatterns ABC transporters family signature. 197 211 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3227g00002 Vium-Chr3227 32551 38200 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3227g00002 84 285 Calmodulin-binding Proteins AT2G36910 32.394 3.24e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3227g00002 K05681 - gmx:100816389 1337.4