Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3225g00002 ATGAAGAGATCCGTTTTGGGTTCTTGCAAAGCTGAAGTTGAATCAGTGGCGGATGAGGAAAACCCTTCCCCAAAACTGAGTCAGTGTGATATCTGCCTCAAGATTTTTGGCTGCGGCAAGGCTTTAGGTGGTCACAGAAGATCCCACTTTATGAAACAGCAGCAACAAAAGAAGGTAAAGACCCGTTTCACTGATAATCACACATCAAAACCTTCTGGCGATAATAACATTAGGGTTATCTGTGATTTTGACGATGATGATGGCAAACACATTTGTTGTATTTGCAAGAAGGAATTTCCCACCAAGAATGCTTTGTTTGGTCACATGCGGTCTCATCCTGAGAGACCATGGAGGGGTGTGTCCCCTCCTACTCAAAAGAACTCATCTTCTCCTTCTTCTTCTTACTACTATTCTCCTTCTTCTTCCTTCAATTCTGATTCAATGGAGAAGAACAAGGACGATCATGATGTTGATGATGGTGGCGACCGACTGATCTCACCTTATGAACATCGCAGAAATGAGATTGATCTTTTAATGTGTACTTCACCCAGCTGGCTTTGTAAAGATACAAGAGGCAGAAGCTCTATCGGTGCGTATCAGGCTGCTGAAACTCTTTTCTACATGAGTTGTTCTAAGTATTTTTCTAGTCACGACTGGAATAGGGTTTTCCCCAAGAAGGATGAAGTGCCGCCAAAGAGTGCCCCAACCCTAATCAAGCAGCGCAAAAGGAAGACTTTTGAATCGTCACCCAGTAAGAAAGATAAGGTGAAGAAGATAAAGTTTTTATTTAAAGGTGAATTGAATTGGGGAAGCACGTCTAATGGGGTTGGGGAATGTGATGGTGAGGGTAATAGGCTGAACAGGTGCAAGGGTTTATCTGAATCTGGGGTTGAGCATAACCATGATGAGAAGAAGATGAAGAGTTTTGATGATTTGAATGGTGAATCTGTTACCCCAACTATGCAAGATCATGTTGGTCCTTCTGATGTGAAGAAGATTAATATGGATAAGAAAGGGAAGAACGGTAAGAAATTGGTACTGAATTCAAGGACAAAAGACTCGGAATCTGAGAAAGCAGCAAGTCAAGAGAAAGCAGATTGGTATAAATGTGCTGCATGTGGAAAAAGCTTCAAAACTTTCCAAGGCCTAGGAGGACACAGATCAGTGCACAAAGAGAAGAATACTGTGAGCATTGATGAGCCAAACCCCTCGGAAGCTGTAGCTGAACAAAACAACTCTAGCAGCTCCAGTAACATGAACAAGATGGAGGACCCATTATTTAATGAAACAACCTTAGCCGACCAGCCATGCCAATCTTCAGGTGTCAAGAAACTGAACTTCGATCTGAATGAGCTGCCTTGTGCCAATGATGAGGACTGA 1380 0.4261 MKRSVLGSCKAEVESVADEENPSPKLSQCDICLKIFGCGKALGGHRRSHFMKQQQQKKVKTRFTDNHTSKPSGDNNIRVICDFDDDDGKHICCICKKEFPTKNALFGHMRSHPERPWRGVSPPTQKNSSSPSSSYYYSPSSSFNSDSMEKNKDDHDVDDGGDRLISPYEHRRNEIDLLMCTSPSWLCKDTRGRSSIGAYQAAETLFYMSCSKYFSSHDWNRVFPKKDEVPPKSAPTLIKQRKRKTFESSPSKKDKVKKIKFLFKGELNWGSTSNGVGECDGEGNRLNRCKGLSESGVEHNHDEKKMKSFDDLNGESVTPTMQDHVGPSDVKKINMDKKGKNGKKLVLNSRTKDSESEKAASQEKADWYKCAACGKSFKTFQGLGGHRSVHKEKNTVSIDEPNPSEAVAEQNNSSSSSNMNKMEDPLFNETTLADQPCQSSGVKKLNFDLNELPCANDED 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3225g00002 459 MobiDBLite consensus disorder prediction 329 364 - -
Vium3225g00002 459 MobiDBLite consensus disorder prediction 383 429 - -
Vium3225g00002 459 MobiDBLite consensus disorder prediction 317 364 - -
Vium3225g00002 459 MobiDBLite consensus disorder prediction 106 165 - -
Vium3225g00002 459 Gene3D Classic Zinc Finger 27 112 - -
Vium3225g00002 459 SUPERFAMILY beta-beta-alpha zinc fingers 366 394 IPR036236 -
Vium3225g00002 459 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Vium3225g00002 459 Pfam C2H2-type zinc finger 90 114 - -
Vium3225g00002 459 Pfam C2H2-type zinc finger 368 392 - -
Vium3225g00002 459 Pfam C2H2-type zinc finger 29 49 - -
Vium3225g00002 459 MobiDBLite consensus disorder prediction 147 165 - -
Vium3225g00002 459 MobiDBLite consensus disorder prediction 399 429 - -
Vium3225g00002 459 Gene3D Classic Zinc Finger 336 426 - -
Vium3225g00002 459 SMART c2h2final6 90 112 IPR013087 -
Vium3225g00002 459 SMART c2h2final6 27 49 IPR013087 -
Vium3225g00002 459 SMART c2h2final6 368 390 IPR013087 -
Vium3225g00002 459 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Vium3225g00002 459 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Vium3225g00002 459 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 73 456 IPR044653 GO:0003700
Vium3225g00002 459 MobiDBLite consensus disorder prediction 121 146 - -
Vium3225g00002 459 SUPERFAMILY beta-beta-alpha zinc fingers 26 112 IPR036236 -
Vium3225g00002 459 ProSitePatterns Zinc finger C2H2 type domain signature. 370 390 IPR013087 -
Vium3225g00002 459 ProSiteProfiles Zinc finger C2H2 type domain profile. 368 395 IPR013087 -
Vium3225g00002 459 MobiDBLite consensus disorder prediction 52 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3225g00002 Vium-Chr3225 16589 18000 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3225g00002 22 123 C2H2 Transcription Factor Family AT2G26940 37.273 1.68e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium3225g00002 zf-C2H2_6 6.6e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3225g00002 - - var:108344105 501.13