Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3218g00002 ATGCAGGAAGACAAGAAGATGAAGGTGAAGAAAGGGTTCTTGGCCGTTCAAGTGGGGTTAGAAGACGAGGACCAAGGTGGTTCCTCTTCTCAGAGATTTGTCATTCCCATCTCATACCTTTACCACCCTCTCTTCAAGCGTCTTCTCGACAAAGCTCACGAGGTCTACGGCTACCACACCGATGGCCCCCTCAAGCTGCCCTGCTCCGTCGACGATTTTCTCCATCTCCGTTGGCGTATCGAAAAGGAGTCAACTTCCGATCAACACCACCATAATCATACCAACCATCGCCTTCCACACGCTTTGCACTTTCACTCCTGTTGA 324 0.5062 MQEDKKMKVKKGFLAVQVGLEDEDQGGSSSQRFVIPISYLYHPLFKRLLDKAHEVYGYHTDGPLKLPCSVDDFLHLRWRIEKESTSDQHHHNHTNHRLPHALHFHSC 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3218g00002 107 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 5 76 IPR003676 GO:0009733
Vium3218g00002 107 Pfam Auxin responsive protein 5 79 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3218g00002 Vium-Chr3218 31967 32455 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3218g00002 9 92 Calmodulin-binding Proteins AT3G43120 41.667 6.77e-14 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3218g00002 K14488 - gmx:100809305 206.838