Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3217g00008 ATGGCTTCATTTCCTTCAAATTCTGCATCAGAGCATAGCATGGCCAGTGCACAAAACAGCTCCTCACCTTCTTTCATGACCAGAGTGGCCATGAGAGTCTCTAGATCAAGATGGTTCACCTTCTTGAGAAGAGTATTCCATTACCAAAATGGACCAAGATCTGATCTTGGCTCCAACCCTTTCAATTCTAGCACTTGGATGATGCTGGAGTTGATTGCTTTACTGGTCCAGATAACAAGCACAACACTCACTTTGGCCATTTCAAAGAGTGAGAAGCCTATTTGGCCTATGAGGGTGTGGATAGCAGGCTATGATATCGGGTGTCTTCTTAATCTGCTGCTACTTTGTGGCCGCTACTACCAACTCCATGTGACTCAAGGAGGTTCTCTTAGCCTTTCTGATTTGGAGCAACAGAGAAACAATGAAGAATCAAGTGTTCTGAGGGGATCACATTTGATGGACAAATGCAGAAGTTCTCTAGAGCTTTTCTTTGCCATATGGTTTGTGATGGGCAATGTTTGGGCCTTTGACTCACGTTTTGAGTCATTCCAACAAGCACCAAAACTGCAGGTGCTATGCATGATCCTACTGGCTTGGAATGCAATATGCTACTCTTTCCCTTTTCTGCTGTTTTTGCTCTTGTGCTGCTGTGTGCCACTGATGAGCACCCTCCTTGGATACAACATGAGCATGGGCTCCTCTGCAAGAGGGGCATCAGATGATCAAATCTCACAAATCCCAAGTTGGAGATACAAAGGTGCTCACACCAACTTGGACTTTGCCAATGACTCTCAAACCACTCAAAGATTGATCAATGATGATCCAGAATGTTGCATTTGCTTGGCCAAGTACAAAGACAGAGAAGAAGTTAGGCAGTTACCTTGTTCCCATTTGTTCCACCTAAAATGTGTGGATCAATGGCTAAGAATTATATCATGTTGCCCTCTTTGTAAACAAGGATTACAAAGGTAG 972 0.4383 MASFPSNSASEHSMASAQNSSSPSFMTRVAMRVSRSRWFTFLRRVFHYQNGPRSDLGSNPFNSSTWMMLELIALLVQITSTTLTLAISKSEKPIWPMRVWIAGYDIGCLLNLLLLCGRYYQLHVTQGGSLSLSDLEQQRNNEESSVLRGSHLMDKCRSSLELFFAIWFVMGNVWAFDSRFESFQQAPKLQVLCMILLAWNAICYSFPFLLFLLLCCCVPLMSTLLGYNMSMGSSARGASDDQISQIPSWRYKGAHTNLDFANDSQTTQRLINDDPECCICLAKYKDREEVRQLPCSHLFHLKCVDQWLRIISCCPLCKQGLQR 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3217g00008 323 MobiDBLite consensus disorder prediction 1 21 - -
Vium3217g00008 323 Pfam Ring finger domain 276 318 IPR001841 -
Vium3217g00008 323 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 9 321 - -
Vium3217g00008 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 322 IPR013083 -
Vium3217g00008 323 SMART ring_2 277 317 IPR001841 -
Vium3217g00008 323 SUPERFAMILY RING/U-box 267 321 - -
Vium3217g00008 323 ProSiteProfiles Zinc finger RING-type profile. 277 318 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3217g00008 Vium-Chr3217 91161 94581 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3217g00008 4 321 C3H Transcription Factor Family AT4G26580 65.723 7.65e-145 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3217g00008 - - gmx:100818715 587.8