Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3215g00017 ATGGCTTCTCTTCACTCTTCTCTTCTATTGCCTCCGAATCTCCTTTCCCTTACTTCTCCTTCAAGTTCCCCTACTCACATTCTCTTGAATCTGAGACCCTCCACCACCCACTTGCGACCCCTTTTCACCACACGGCGTCGTTTTGGGAGACCCTTCGCAGTGGCTGAGCAGGCAACGGTGACGGAGGCCGCAAGAAGGCTCTACGTTGGAAACATTCCCCGCACTGTCAACAACGATGAGCTCGCCAAGATTGTTCAAGAACATGGCGGTGTTGAGAAAGCTGAGGTTATGTATGATAAATACTCTGGAAGGAGCCGTCGCTTTGCGTTTGTTACAATGAAAACTGTTGAGGACGCAAATGCTGTGATTGAGAAACTTAACGGCACTGAAATTGGAGGGCGTGAGATTAAAGTAAATGTTACTGAAAAACCTTTATCAGCATCAGATTTGCCTTTATCCCAGGCTGAGGAATCTCAATTTATTGACAGTCCCCACAAGGTGTATGTGGGAAATCTAGCCAAGACAGTAACAACTGATACTCTTAAAAAGTTTTTTTCTGAGAAGGGAAAAGTTCTGAGTGCCAAGGTTTCACGGGTCCCTGGTACCTCAAAATCCAGTGGGTATGGTTTTGTTACCTTTTCATCAGAAGAGGATGTAGAAGCTGCAATCTCGTCTTTCAACAATTCTTCATTAGAAGGGCAAAAAATCCGAGTGAACAAGGCATAG 726 0.4532 MASLHSSLLLPPNLLSLTSPSSSPTHILLNLRPSTTHLRPLFTTRRRFGRPFAVAEQATVTEAARRLYVGNIPRTVNNDELAKIVQEHGGVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNVTEKPLSASDLPLSQAEESQFIDSPHKVYVGNLAKTVTTDTLKKFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISSFNNSSLEGQKIRVNKA 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3215g00017 241 CDD RRM2_PSRP2 163 241 - -
Vium3215g00017 241 FunFam 30S ribosomal protein 2, chloroplastic 152 241 - -
Vium3215g00017 241 SUPERFAMILY RNA-binding domain, RBD 58 143 IPR035979 GO:0003676
Vium3215g00017 241 SUPERFAMILY RNA-binding domain, RBD 154 241 IPR035979 GO:0003676
Vium3215g00017 241 Gene3D - 53 150 IPR012677 -
Vium3215g00017 241 PANTHER OS02G0815200 PROTEIN 62 240 - -
Vium3215g00017 241 CDD RRM1_PSRP2_like 66 145 - -
Vium3215g00017 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 143 IPR000504 GO:0003723
Vium3215g00017 241 SMART rrm1_1 66 139 IPR000504 GO:0003723
Vium3215g00017 241 SMART rrm1_1 166 239 IPR000504 GO:0003723
Vium3215g00017 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 237 IPR000504 GO:0003723
Vium3215g00017 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 137 IPR000504 GO:0003723
Vium3215g00017 241 Gene3D - 151 241 IPR012677 -
Vium3215g00017 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 241 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3215g00017 Vium-Chr3215 169427 172966 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3215g00017 67 241 Eukaryotic Initiation Factors Gene Family AT2G23350 32.571 6.87e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3215g00017 K13126 - gmx:100811197 364.385