Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3215g00016 ATGGCTGTGCCATCATTCTCCTCTTCCTTCACCTACGACGTGTTCCTCAGCTTCAGAGGAGAAGATACTCGTTACAGTTTCACCGGCAATCTCTACAGAGCCCTTCGTGACAGAGGAATTCACACCTTCATCGACGACGAGAAGCTTCCCAAAGGAGACGAAATCACCTCTGCACTTGAGAAGGCAATCGAAGGTTCCAGAATTTTCATCATCGTTTTCTCTCGCAACTACGCCTCTTCCTCCTTTTGCTTGAACGAGCTCGCCTACATTCTTCCCTACGCTAATAAAAATGGTTTGCTGGTTTTGCCACTCTTCTACGACGTCGTTCCTTCCCACGTGCGCCACCACACGGGTAGCTTCGGAGAAGCTTTGGATACACATGAAAACAGGTTCAAAGCTACGAGTCAGGGTTTTGAGCTTAACATGGAGAAGCTCAACAAATGGAAGATGGCTCTGCGTGGAACAGCTAACTTATCTGGCTATCATTTCAAACATGGGGAGGAATATGAATACGAGTTTATCAAGAGGATAGTTGACTTGGTCTCCAACAAGATTAACCGTGCTCCTTTACACGTTGCGGATTATCCAGTTGGACTAGAGACTCGAGTGCTAGAAGTAAAGTTGCTTCTAGACATAGGATCTGATGATGGTGTCCACATGGTAGGGATCCATGGACTCGGTGGAGTTGGTAAAACCACACTTGCTCTTGCAGTGTACAATTCCATCGCTGACCATTTTGAAGGCTTGTGTTTCCTCGAAAATGTGAGAGAGAATTCAAACAAACATGGCCTACAGCATCTTCAAAGAATCCTTCTTTCTCAAATGATTGGAGAAAATAATGTCAACATAACTAGTGCGAGACAAGGGATTTCAATGATGGAGCATAGGCTACGACAGAAGAAGATTCTCTTGATTCTAGATGATGTTGACAAACATGAACAGTTACAAGCAATTGTTGGAAGACCTGATTGGTTTGGTCCCGGCAGTAGAGTCATCATCACAACTAGGGACAAACATTTGTTATCATGTCACTTGATCGAAAAATTATATAAAGTGAAGAAGTTGGAAAAGAACAATGCTCTTCGACTGCTTAGTTGGAAAGCTTTCAGAACAGAAGAAGTTGATACAAGTTATTTGAATGTAATGGATCGTGTACTAGCTTATGCTTCTGGCCATCCATTGGCTTTGGAAGTAATCGGTTCGAAGTTGTTTAGAAAAAGTGTAAAGGAATGGGAATCTGCCATCAAACAGTACGAGAAAATTCCTAACAATCAAATCCTTGAGGTGCTTAAAATAAGTTTTGATGCTTTAGAGGAAGTAGAGAAGAGTGTTTTTCTTGACATTTCTTGTTGCTTCAAAGCATATGCATTGTCAGAGGTGGAAGATATACTTCGTGCTCATTATGGTGATTGCATGAAATATCATATTGGGGTGTTGGTTGAAAAATCTCTGATAAAATATGGTTATAATTCTGTAGTTACAATGCATGACTTGATAGAAGACATGGGTAAAGAAATTGTCCGGCAGAAATCTCCAGATAAGCCAGGGAAGCGCAGTAGATTATGGTCACCAGAAGAGATAATTAAAGTTTTGGAAGACAACTTGGGAAGTGGAGAAATTGAAATCATATGTTTAAATTCCTCCTTACCTGACAAAGAAGAAATAGTGGAATGGAACAGAAAGGCCTTCAAAAAGATGAAAAACCTCAAAACACTTATCATTAAAAATGGTAATTTTTCGGAAGGTCCTGAATATCTTCCGAATAGTTTAAGAGTACTGGAATGGTTGAAATATCCTTCACAAGGGCTACCGCCAGATTTTCGTTCAAAGCAACTTTCCTTATGCAAATTACCTTCAAGTTGTTTTGGGTCACTCGGATTGGCTGAGTTTTCAAAGAAGTTCATGAATATGACTCTTCTGAATTTTGACGAATGTGAAGGTTTAACACAGATACCTGATCTATCTGGGCTGCCAAATTTAGAAAGATTTTCATTCAAGAATTGTAAGAGTTTAATTACAATCCATGACTCCATTGGCTTCCTAGGTAAGCTTAACTCCTTGAATGCTGTTGGTTGCAGCAAGCTTAGGAGTTTCCCCCCCCTCAAATTGACTTCTCTGGAAAATCTTGAACTTTCATATTGTTACAGTCTTGAGAGGTTCCCAGAAATATTAGGAAAAATGGGACAGATAACAGAACTTGTCTTGGAGGACTGTCACATAAAGGAATTGCCAATTTCATTTCAAAATCTCACCGAGCTTCAAACATTACAGTTGCGTTTGTGTCCAAGGTTAAGGTTACCTAGTAGTATAGTCATGATGCCAAAACTGGCCAACATTATTGCTTGGGAATCTAAAGGGTGGCTATTTCCAAAACAGGTCGAGGGGGAAGAGAAAATAGGCTCAATGGTGTCTTCAAACGTAGATTGTCTTTATCTCCCAGGCTGCAAACTCTCAGATGATTTTTTCCCAATAATTCTTGAATGGTTTGCTAATGTAAAAGATTTAGACCTATCAAGGAATAATTTCACGGTTCTTCCTGAATGTATCGCCAATTGTCACTTGTTATGCAAGCTTACTTTGGATGCCTGTGATAGTCTTCGAGAGATTAGAGGGATTCCACCAAACATACGACAGTTATTAGCAAGAAATTGTAAATCCTTCACTTCTTCTTGCGGAAGAACTTTACTGAATCAGAAACTGCATGAGGCTGGAAACACCATGTTTTCGTTTTCAGGAGCAAGGTTTCCAGAATGGTTCGATCACCACAGTCGGGGACCATCTTGTTCTTTCTGGGTTGGCAAAAAATTCCCTTCCATTGCTCTTTGTATTGCTATTGGACCAACTCATTTGGAACACGTTGAAATTGTTGGACCTATCATGATCATCAACAGCATTGAATGTTCATTTGATGGGGAAGAGAATCCTTATTTATATATGTTCCCTCATCACACATATATTTTCGATTTGCAACATATAGTTTTTTCAGATTATCTAGACAGATTTGTTTCAGAAAATGAATGGAACCACGTGGAGATTACATACTCAGTCGAGCAGAGATTCAAGGAAAAAGACAAACATGCGGTGACCCCAATCTCTATAGAAAATGGAATCTATGTGTTCAAACAGAGGAGCAACATGGAGGATATTCAATTCACTGATCCCCACAAAAAGAGAAGATTAGATGTTGATCCAGAGTAG 3198 0.399 MAVPSFSSSFTYDVFLSFRGEDTRYSFTGNLYRALRDRGIHTFIDDEKLPKGDEITSALEKAIEGSRIFIIVFSRNYASSSFCLNELAYILPYANKNGLLVLPLFYDVVPSHVRHHTGSFGEALDTHENRFKATSQGFELNMEKLNKWKMALRGTANLSGYHFKHGEEYEYEFIKRIVDLVSNKINRAPLHVADYPVGLETRVLEVKLLLDIGSDDGVHMVGIHGLGGVGKTTLALAVYNSIADHFEGLCFLENVRENSNKHGLQHLQRILLSQMIGENNVNITSARQGISMMEHRLRQKKILLILDDVDKHEQLQAIVGRPDWFGPGSRVIITTRDKHLLSCHLIEKLYKVKKLEKNNALRLLSWKAFRTEEVDTSYLNVMDRVLAYASGHPLALEVIGSKLFRKSVKEWESAIKQYEKIPNNQILEVLKISFDALEEVEKSVFLDISCCFKAYALSEVEDILRAHYGDCMKYHIGVLVEKSLIKYGYNSVVTMHDLIEDMGKEIVRQKSPDKPGKRSRLWSPEEIIKVLEDNLGSGEIEIICLNSSLPDKEEIVEWNRKAFKKMKNLKTLIIKNGNFSEGPEYLPNSLRVLEWLKYPSQGLPPDFRSKQLSLCKLPSSCFGSLGLAEFSKKFMNMTLLNFDECEGLTQIPDLSGLPNLERFSFKNCKSLITIHDSIGFLGKLNSLNAVGCSKLRSFPPLKLTSLENLELSYCYSLERFPEILGKMGQITELVLEDCHIKELPISFQNLTELQTLQLRLCPRLRLPSSIVMMPKLANIIAWESKGWLFPKQVEGEEKIGSMVSSNVDCLYLPGCKLSDDFFPIILEWFANVKDLDLSRNNFTVLPECIANCHLLCKLTLDACDSLREIRGIPPNIRQLLARNCKSFTSSCGRTLLNQKLHEAGNTMFSFSGARFPEWFDHHSRGPSCSFWVGKKFPSIALCIAIGPTHLEHVEIVGPIMIINSIECSFDGEENPYLYMFPHHTYIFDLQHIVFSDYLDRFVSENEWNHVEITYSVEQRFKEKDKHAVTPISIENGIYVFKQRSNMEDIQFTDPHKKRRLDVDPE 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3215g00016 1065 Gene3D Ribonuclease Inhibitor 740 890 IPR032675 -
Vium3215g00016 1065 SUPERFAMILY L domain-like 554 893 - -
Vium3215g00016 1065 Gene3D - 185 347 IPR027417 -
Vium3215g00016 1065 ProSiteProfiles TIR domain profile. 10 185 IPR000157 GO:0007165
Vium3215g00016 1065 Gene3D - 5 184 IPR035897 -
Vium3215g00016 1065 Gene3D Ribonuclease Inhibitor 544 729 IPR032675 -
Vium3215g00016 1065 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 161 IPR035897 -
Vium3215g00016 1065 SUPERFAMILY "Winged helix" DNA-binding domain 425 532 IPR036390 -
Vium3215g00016 1065 PRINTS Disease resistance protein signature 296 310 - -
Vium3215g00016 1065 PRINTS Disease resistance protein signature 220 235 - -
Vium3215g00016 1065 PRINTS Disease resistance protein signature 389 403 - -
Vium3215g00016 1065 PRINTS Disease resistance protein signature 701 717 - -
Vium3215g00016 1065 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 448 IPR027417 -
Vium3215g00016 1065 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 187 - -
Vium3215g00016 1065 Gene3D - 354 438 IPR042197 -
Vium3215g00016 1065 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 792 IPR044974 GO:0006952
Vium3215g00016 1065 SMART till_3 11 158 IPR000157 GO:0007165
Vium3215g00016 1065 Pfam NB-ARC domain 205 422 IPR002182 GO:0043531
Vium3215g00016 1065 SMART AAA_5 217 351 IPR003593 GO:0016887
Vium3215g00016 1065 Pfam TIR domain 12 187 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3215g00016 Vium-Chr3215 158469 164628 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3215g00016 4 850 WRKY Transcription Factor Family AT4G12020 29.714 4.26e-76 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3215g00016 - - gmx:100780257 1304.66