Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3215g00015 ATGGCGCCGAAGAAGCCGAGAAGCGTGTCAAGGAACCCTGAACTCATTAGGGGTATTGGGAAGTACTCAAGGTCCCAGATGTACCACAAGAGGGGCATCTGGGCCATCAAGGCCAAACACGGCGGCGTTTTCCCTCGCCACGACCCTTCGCCCAAGCCCGACGCCCCGGCCCAGAAGCCTCCCAAGTTTTACCCCGCCGACGATGTCAGGAAGCCCCTCGTCAACAAGCACAAGCCCAAGCCCGCCAAACTTAGGGCTAGCGTTACTCCAGGAACAGTGTTGATCCTGCTTGCTGGCAGATTCAAGGGAAAGAGGGTTGTTTTCCTGAAGCAGCTTCCATCTGGATTGCTTCTGGTAACAGGGCCATTCAAGATCAATGGTGTTCCTCTTAGAAGGGTGAACCAATCTTATGTCATTGGTACATCTACAAAAGTGGACATCTCTGGTGTTAGTGTTGATAAATTTGATGACAAGTACTTTTCCAAGGATGCCAAGAAGAAGAAAACAAAGGGAGAGGGCGAGTTCTTTGAGGCAGAGAAGGAGGAGAAAAATGTTCTTCCCCAAGAGAAGAAAGATGACCAGAAAACCGTGGATACTGCTTTGTTAAAGGCAATTGAGAGTGTTCCAGACCTGAAGTCTTACTTGGGTGCTAGGTTTTCTTTGAAGGCAGGAATGAAGCCCCATGAACTAGTCTTCTAG 699 0.4979 MAPKKPRSVSRNPELIRGIGKYSRSQMYHKRGIWAIKAKHGGVFPRHDPSPKPDAPAQKPPKFYPADDVRKPLVNKHKPKPAKLRASVTPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDISGVSVDKFDDKYFSKDAKKKKTKGEGEFFEAEKEEKNVLPQEKKDDQKTVDTALLKAIESVPDLKSYLGARFSLKAGMKPHELVF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3215g00015 232 Pfam Ribosomal protein L6, N-terminal domain 4 60 IPR005568 GO:0003735|GO:0005840|GO:0006412
Vium3215g00015 232 SUPERFAMILY Translation proteins SH3-like domain 86 172 IPR008991 -
Vium3215g00015 232 FunFam 60S ribosomal protein L6 86 170 - -
Vium3215g00015 232 CDD KOW_RPL6 80 232 IPR041997 -
Vium3215g00015 232 Gene3D - 86 170 IPR014722 -
Vium3215g00015 232 Pfam Ribosomal protein L6e 125 232 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vium3215g00015 232 PANTHER 60S RIBOSOMAL PROTEIN L6 1 232 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vium3215g00015 232 MobiDBLite consensus disorder prediction 42 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3215g00015 Vium-Chr3215 155756 157530 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3215g00015 3 232 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 80.603 1.82e-121 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3215g00015 K02934 - gmx:100784101 387.882