Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3215g00002 ATGGCTTCAAAAGTTTCAAAAAGTGGTGCAAAGAACATGAAGCGTAGTTGGTCTTATATGGAAAAGGAAATTATTGAAGAATTCTCCAAAGATGGATTAGAAATACTTGAGCTTCTAGAGATTATGCAAGGAGAAAAAGATCCTCAAAAATGGCATGAAAATATTTTTGGCAACAAAAGATGCAAGAAATCCCACAACTTTGAAGAAAGGTCATCAAAATCTGAAGATGGTAAAGGGTTTGAAAAACATGATTCTTTGGCAATTCTACACCAAAAAGATCAATTATCAATAGAAGTTTCACCATCAAAGGTATGTTTCTCCTCACAAGAGCATCTCACTAGTTCTTCACAAGAGCATATCACTAGTTCTACACAAGAGCATCTCACTAGTTCTTCACAAGAACATCTTACTAGTGATGATCATGATCATTCTTATTTGACTTTTATGGAAAATTTTCAAGAGCATATCTTTCAACATGGTAAACCTCTTGAGAAGCAACTCACACTCAGTGATGTCAATGTTAATCTAAATAGGCTTCTTCTCAACAAAAAACATGTTGAAAAAGCTTTTTTACCATTCTTAAGAAATGGTGAAGATATTGAAAAGGGAATTGAAGTTTGTGTTTATGATATCCGCAAGAATAGTTACACTCTAACATTCAAGAAGTGGACAAATAAATATTATGTGTTGAATGGTGGGTGGAAAGATTTCTTTAAAGATCATAAACTCGAAAAGAATGATACAATCAAAGTGTGGATGTTTCGTCATTCAAATCATAGCAATTTATGTTTAGCTTTGGATTACAAGAAGATTGAAAGCTGA 822 0.3285 MASKVSKSGAKNMKRSWSYMEKEIIEEFSKDGLEILELLEIMQGEKDPQKWHENIFGNKRCKKSHNFEERSSKSEDGKGFEKHDSLAILHQKDQLSIEVSPSKVCFSSQEHLTSSSQEHITSSTQEHLTSSSQEHLTSDDHDHSYLTFMENFQEHIFQHGKPLEKQLTLSDVNVNLNRLLLNKKHVEKAFLPFLRNGEDIEKGIEVCVYDIRKNSYTLTFKKWTNKYYVLNGGWKDFFKDHKLEKNDTIKVWMFRHSNHSNLCLALDYKKIES 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3215g00002 273 MobiDBLite consensus disorder prediction 115 137 - -
Vium3215g00002 273 MobiDBLite consensus disorder prediction 115 132 - -
Vium3215g00002 273 SUPERFAMILY DNA-binding pseudobarrel domain 164 265 IPR015300 -
Vium3215g00002 273 Pfam B3 DNA binding domain 165 251 IPR003340 GO:0003677
Vium3215g00002 273 Gene3D - 158 269 IPR015300 -
Vium3215g00002 273 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 53 266 IPR005508 GO:0003677
Vium3215g00002 273 SMART B3_2 163 270 IPR003340 GO:0003677
Vium3215g00002 273 CDD B3_DNA 193 259 IPR003340 GO:0003677
Vium3215g00002 273 ProSiteProfiles B3 DNA-binding domain profile. 164 270 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3215g00002 Vium-Chr3215 47284 48105 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3215g00002 161 270 B3 DNA Binding Superfamily AT4G03170 41.071 5.66e-21 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium3215g00002 B3 4.4e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3215g00002 - - vum:124833533 554.288