Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3215g00001 ATGCATGAAAATATTTTTGGCAACAAAAGATGCAAGAAATCCCACAACTTTGAAGAATGGTCATCAAAATCATCTGAAGATGGTAAAGTTGTTGAAAAACATGATTCTTTGGCAATTCTACACCAAGAAGATCAATTATCAATAGAAGTTTCATCATCAAAGGTATGTTTCTCCTCACAAGAGCATCTCACTAGTTCTTCACAAGAGCGTCTCACTAGTTCTTCACAAGAGCATCTCACTAGTTCTTCACAAGAACATCTTACTAGTGATGATCATGATCATTCTTATTTGACTTTGGTGGAAAATTTTCAAGAGCATATCTTTCAACATGGTAAACCTCTTGAGAAGCAACTCACACTCAGTGATGTCGATACTAATCTACATAGGCTTCTTCTCAACAAAAAACATGCTGAAAAATCTTTTTCACCATTCTTAAGAAATGGTGAAGATATTGAAAAGGGAATTGAAGTTTGTGTTTATGATATTCGCAATAATAGTTACACTTTAACATTCAAGAAGTGGACAAATAAATATTATGTGTTAAATGGTGGGTGGAAAGATTTCTTTGAAGATCATAAACTCGAAAAGAATGATACAATCAAAGTGTGGAGCTTTCGTCATTCAAATCATAGCAATTTATGTTTTGCTTTTGATTACAAGAAGATTGAAAGTTGA 675 0.3289 MHENIFGNKRCKKSHNFEEWSSKSSEDGKVVEKHDSLAILHQEDQLSIEVSSSKVCFSSQEHLTSSSQERLTSSSQEHLTSSSQEHLTSDDHDHSYLTLVENFQEHIFQHGKPLEKQLTLSDVDTNLHRLLLNKKHAEKSFSPFLRNGEDIEKGIEVCVYDIRNNSYTLTFKKWTNKYYVLNGGWKDFFEDHKLEKNDTIKVWSFRHSNHSNLCFAFDYKKIES 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3215g00001 224 MobiDBLite consensus disorder prediction 66 89 - -
Vium3215g00001 224 Gene3D - 109 221 IPR015300 -
Vium3215g00001 224 Pfam B3 DNA binding domain 115 201 IPR003340 GO:0003677
Vium3215g00001 224 SUPERFAMILY DNA-binding pseudobarrel domain 115 219 IPR015300 -
Vium3215g00001 224 ProSiteProfiles B3 DNA-binding domain profile. 115 221 IPR003340 GO:0003677
Vium3215g00001 224 CDD B3_DNA 116 210 IPR003340 GO:0003677
Vium3215g00001 224 MobiDBLite consensus disorder prediction 66 83 - -
Vium3215g00001 224 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 21 217 IPR005508 GO:0003677
Vium3215g00001 224 SMART B3_2 114 221 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3215g00001 Vium-Chr3215 347 1021 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3215g00001 112 221 B3 DNA Binding Superfamily AT4G03170 41.071 1.48e-21 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium3215g00001 B3 1.8e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3215g00001 - - vum:124833522 458.373