Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3210g00006 ATGAAAGTAATAAACTTTTCTGGTAGCATAGCAAAACCCAGTTTTTTGATTGGCCAATCGGAAATGCCTATTCTAACATTTGGTCATTGTAAGCTGAGTGCTACCCTTGCTCTACGGTTATCACGAGATTGCATTAGAAGAATGGAGTTGATTTCGAAACTTCAGTATTCTGTTGCTGATAGGACATTTAGTTCTGGTTCGGTGTATTCGCCGACGCCTGAATCGGAGTCCGGTAGAATGAATCGTCGCCGGGGAGGTTCCTCATCGATATATAGCCGTCCTAGTTTATCAGAAATGAAGAAAGAGAAGGCTGCACTAAGGGAAAAAGTTTATGAGTTCTTGAAGACAATTGGCATTGTTCCTGATGAGCTTGATGGTCTTGAACTTCCTGTGACTGTTGATGTTATGAGGGAGCGCATAGATTTTCTTCATAGTTTGGGGCTTACAATTGAAGATATCAACAATTATCCACTTGTTCTTGGCTGCAGCGTCAAGAAGAACATGATTCCTGTGCTTGACTATCTTGGTAAATTGGGAGTGAGGAAATCCTCCATTACGTTGTTCTTGCAGAGATACCCACAAGTTCTCCATGCTAGTGTTGTTGTGGATCTTATGCCAGTGGTTAATTATCTTAAGGGGATGGATATCAAGACTGAGGATATTCCTCGTGTTCTTGAGAGGTACCCTGAAGTGCTTGGCTTCAAACTTGAGGGAACCATGAGCACATCGGTTGCTTATTTGATTGGAATTGGTGTAGGAAGAAGACAAATTGGAGGTGTCTTAACTAAATATCCAGAGATTTTGGGTATGCGAGTTGGTAGAATCATTAAGCCTTTTGTGGAATATCTGGAAAGTTTGGGAATTCGAAGGTTAGCCATTGCTAGATTGATAGAGCAACGACCTTATATTCTTGGATTTGGGCTGGATGAGAAGGTGAAACCAAATGTTAAATCCCTTGAAGATTTTAGTGTTAGACGAACATCACTTCCTTCTATAATTGCTCAGTATCCTGACATCATTGGAACTGACTTAAATTCAAAGCTTTTCAATCAGAGAATTATACTCAATTCGGTGCTTGAATTGGAAACAGAGGACTTTGCCCGAGTTGTTGAGAAGATGCCACAGGTAGTTAGCCTCATTAGGGGACCTATGCTGAAGCATGTTGATTTTCTTAAGGATTGTGGCTTTTCATTGCCTCAGATAAGGAAGATGATTGTTGCATGTCCTCAATTACTCGCTTTAAACATTGACATTATGAAACTTAGCTTTGATTACTTCCAAATGAAGATGAAAAGGCCTTTGGAAGATTTGGTTACATTCCCTGCATTCTTCACTTATGCTTTGGAGTCAACTATAAAGCCTAGGCATGTGAGGGTTGCCAAGAAAGGGTTAAAGTGTTCTTTGTCATGGATGCTTAATTGTTCTGATGAGAAATTTGAGCAACGAATGGACTATGACACTATTGACATGGAAGAAATGGAAATGGAAATGGAAATGGAATCATCATTTGACATGGATTCACTAACACAACCAAGGAGTGATGATGAGTCAGATTTTGACTATGAAGACAGTGACGAAGATGATGCGTAG 1590 0.4006 MKVINFSGSIAKPSFLIGQSEMPILTFGHCKLSATLALRLSRDCIRRMELISKLQYSVADRTFSSGSVYSPTPESESGRMNRRRGGSSSIYSRPSLSEMKKEKAALREKVYEFLKTIGIVPDELDGLELPVTVDVMRERIDFLHSLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSSITLFLQRYPQVLHASVVVDLMPVVNYLKGMDIKTEDIPRVLERYPEVLGFKLEGTMSTSVAYLIGIGVGRRQIGGVLTKYPEILGMRVGRIIKPFVEYLESLGIRRLAIARLIEQRPYILGFGLDEKVKPNVKSLEDFSVRRTSLPSIIAQYPDIIGTDLNSKLFNQRIILNSVLELETEDFARVVEKMPQVVSLIRGPMLKHVDFLKDCGFSLPQIRKMIVACPQLLALNIDIMKLSFDYFQMKMKRPLEDLVTFPAFFTYALESTIKPRHVRVAKKGLKCSLSWMLNCSDEKFEQRMDYDTIDMEEMEMEMEMESSFDMDSLTQPRSDDESDFDYEDSDEDDA 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3210g00006 529 Gene3D Transcription termination factor 3, mitochondrial 139 277 IPR038538 -
Vium3210g00006 529 Gene3D Transcription termination factor 3, mitochondrial 278 489 IPR038538 -
Vium3210g00006 529 SMART mt_12 258 289 IPR003690 GO:0003690|GO:0006355
Vium3210g00006 529 SMART mt_12 186 217 IPR003690 GO:0003690|GO:0006355
Vium3210g00006 529 SMART mt_12 434 465 IPR003690 GO:0003690|GO:0006355
Vium3210g00006 529 SMART mt_12 367 397 IPR003690 GO:0003690|GO:0006355
Vium3210g00006 529 SMART mt_12 294 325 IPR003690 GO:0003690|GO:0006355
Vium3210g00006 529 SMART mt_12 222 253 IPR003690 GO:0003690|GO:0006355
Vium3210g00006 529 SMART mt_12 402 433 IPR003690 GO:0003690|GO:0006355
Vium3210g00006 529 SMART mt_12 87 120 IPR003690 GO:0003690|GO:0006355
Vium3210g00006 529 SMART mt_12 150 181 IPR003690 GO:0003690|GO:0006355
Vium3210g00006 529 MobiDBLite consensus disorder prediction 65 95 - -
Vium3210g00006 529 FunFam Transcription termination factor mterf4, chloroplastic 136 273 - -
Vium3210g00006 529 Pfam mTERF 172 480 IPR003690 GO:0003690|GO:0006355
Vium3210g00006 529 MobiDBLite consensus disorder prediction 499 529 - -
Vium3210g00006 529 FunFam Transcription termination factor MTERF4, chloroplastic 274 488 - -
Vium3210g00006 529 PANTHER CGI-12 PROTEIN-RELATED 171 483 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3210g00006 Vium-Chr3210 65415 69019 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium3210g00006 mTERF 9.2e-105 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3210g00006 K15031 - gmx:100785223 815.839