Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3210g00004 ATGGGTGCCGTTGTCGAGTGTTACCCTCCGCCGCGTACGGCGGTGCTGTCTCTCAATACGCTGCCGCTGGGCTTCCGTTTCCGTCCCACCGATGAAGAGCTTATTGATTACTACCTGCGCTCGAAGATCAACGGAAACGGGGACGATGTCTGGGTTATCCGTGAGATTGATGTCTGCAAATGGGAGCCTTGGGATTTGCCTGATTTGTCAGTGGTACGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCGCAGGATCGGAAGTATCCCAATGGGCACAGGTTGAACCGAGCTACGACACATGGGTATTGGAAAGCAACGGGGAAGGATCGAAAGATTAAGTCTGGTTCTGCTCTGATCGGAATGAAGAAGACTCTTGTTTTCTATACTGGTCGTGCACCGAAGGGGAAGAGGACCAATTGGGTTATGCATGAGTACAGGCCTACCCTGAAGGAGCTCGATGGTACCAATCCTGGACAGAATCCATACGTCCTTTGTCGGTTATTTAAGAAACATGATGAGACTCTTGAAGGTTCAAATGGTGAGGATGTGGAGCGGACTGCTTCAACCCCTATGACTGCCAATCACTCTCCAGATGAAATACAATCTGATTCATCTCTGGATCCAGCATCTTCCTCACAGATCACTGAGGGTGAAAAGCCGCTAACAGTTATCCATGAAAACTCTGAGGAAGCAATATCCAACATTATAACTGCAGTTGACTCCCATAGTGATGGATGTGATGCTCCTGATGTACAAAATCAAATTGTAAAACCAGCTGCAGAGGATCAGCCATTTAACTTTGAGGATTTTTATGACCCAACAAACCAGCAATTAGATGACAAATTATTCTCCCCAGTCCATGCTCATTTCCCACCTGAAATTTACTATCAATCAGAACTTCAGTATGGTACAAATGACAATATACCCGACTTTTTTGACTCGGTTAACTGGGACGCTATCTCCTATGATACTAGCAGTCTAGAGCTAGGCTCATCCTTCCTCAATGTCAGGGACAATGGATCTGGCAGTGACTCAGATGTGGAAATGGCCAATATGACGAATCTGCAGGCATTACATGGCCATCCTAACGAGGCAGTTGAGAAGAAGAGTAACGTAGGATTATTTCAGAGCACTCCTCTGATGGCTTTCTCAAACGATGGTTATATGGGCCAGGTAGATGATCCGATCAAGAATAGTGGGCAACTAAGAGACTTTGATACGCTTGTTAATGGTGATACTGGAATCAGAATAAGGGCTCGTCAAGGACGAAACGAACAGCCAAACATGAATGGAATGGTACAATCACAAGGCAATGCACCAAGGAGAATACGATTACTTGTCGAGCGACAGTTTGCTTCCGAGAAAGCGGCGAAAGATGGAAGTTGTGCTTCAGCCCCAGAAGAGCATAATTCAAAAACCACCATTTCTAGGGAGTGGAATGCTTCGGAAAACAATGCTACCGATGAGAGTTCCGGCAGCTGTGATGATGTGGATGAAGCAGAGAAGGAATCTCCTGAGTCATCTGACTTGGGAAAGATTACTCGGCAGCATGTTGCAACTGCAGAATCCTTCGTCTCAAAAGAGAGCAGAAGGGGCCATCACAGTTCAAAGGTTTCGTCTAACCGTGGCATGTGGTCTTATGTTCTTGCAGTTTCTGCAACTGTGTTGGTTTCAGTAACAGTCATTGTTAATATATGGGCGTATGTGAGATCTTAA 1719 0.4602 MGAVVECYPPPRTAVLSLNTLPLGFRFRPTDEELIDYYLRSKINGNGDDVWVIREIDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGHRLNRATTHGYWKATGKDRKIKSGSALIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKHDETLEGSNGEDVERTASTPMTANHSPDEIQSDSSLDPASSSQITEGEKPLTVIHENSEEAISNIITAVDSHSDGCDAPDVQNQIVKPAAEDQPFNFEDFYDPTNQQLDDKLFSPVHAHFPPEIYYQSELQYGTNDNIPDFFDSVNWDAISYDTSSLELGSSFLNVRDNGSGSDSDVEMANMTNLQALHGHPNEAVEKKSNVGLFQSTPLMAFSNDGYMGQVDDPIKNSGQLRDFDTLVNGDTGIRIRARQGRNEQPNMNGMVQSQGNAPRRIRLLVERQFASEKAAKDGSCASAPEEHNSKTTISREWNASENNATDESSGSCDDVDEAEKESPESSDLGKITRQHVATAESFVSKESRRGHHSSKVSSNRGMWSYVLAVSATVLVSVTVIVNIWAYVRS 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3210g00004 572 Gene3D NAC domain 30 175 IPR036093 GO:0003677|GO:0006355
Vium3210g00004 572 MobiDBLite consensus disorder prediction 182 218 - -
Vium3210g00004 572 ProSiteProfiles NAC domain profile. 21 171 IPR003441 GO:0003677|GO:0006355
Vium3210g00004 572 MobiDBLite consensus disorder prediction 467 492 - -
Vium3210g00004 572 SUPERFAMILY NAC domain 14 171 IPR036093 GO:0003677|GO:0006355
Vium3210g00004 572 MobiDBLite consensus disorder prediction 176 218 - -
Vium3210g00004 572 Pfam No apical meristem (NAM) protein 22 147 IPR003441 GO:0003677|GO:0006355
Vium3210g00004 572 MobiDBLite consensus disorder prediction 424 438 - -
Vium3210g00004 572 MobiDBLite consensus disorder prediction 419 441 - -
Vium3210g00004 572 MobiDBLite consensus disorder prediction 456 540 - -
Vium3210g00004 572 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 242 - -
Vium3210g00004 572 FunFam Nac domain-containing protein 86 30 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3210g00004 Vium-Chr3210 44544 48329 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3210g00004 14 449 NAC Transcription Factor Family AT4G35580 43.049 3.67e-96 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium3210g00004 NAM 5.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3210g00004 - - gmx:100778903 872.848