Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium320g00001 ATGCATCAAGCTAGAATGCCTTTGCCACTAGAAATGGAAGAGGAGCCAGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCACGTGCTAAGGCCGAGCTTGAAAAGAAAGTAATCAGAAACAGAAAGCCATACCTGCACGAATCTCGTCACCTACACGCCATGAGAAGGGCAAGAGGCAATGGTGGTCGCTTTCTCAACACAAAGAAGCTTGAAAATAACAGTTCTAGTGTCACTTCTGACGAAGGCAACAATAGTGGTGCAAACCCCTCAGCAAACTCATTTAACACTCTGCATAGGCTCACAAACAATGAGAATCTAGCCTCATCAAACATGGTTCAGGACATGCACAGAGTTCAGAGTTTCAACAATGGTTACCATAATGGAAATTGTCTTACAGCACTATACCTTTCACAAGTGAATGGAAAAAAGGAGGGAGGAGACTACTTTGGAAAAGAGAGAGACCCTCTTGGGGCTTTCAAATAG 501 0.4331 MHQARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIRNRKPYLHESRHLHAMRRARGNGGRFLNTKKLENNSSSVTSDEGNNSGANPSANSFNTLHRLTNNENLASSNMVQDMHRVQSFNNGYHNGNCLTALYLSQVNGKKEGGDYFGKERDPLGAFK 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium320g00001 166 MobiDBLite consensus disorder prediction 72 101 - -
Vium320g00001 166 SMART cbf3 12 73 IPR001289 GO:0003700|GO:0006355
Vium320g00001 166 Gene3D - 13 74 - -
Vium320g00001 166 PRINTS CCAAT-binding transcription factor subunit B signature 47 70 IPR001289 GO:0003700|GO:0006355
Vium320g00001 166 PRINTS CCAAT-binding transcription factor subunit B signature 16 38 IPR001289 GO:0003700|GO:0006355
Vium320g00001 166 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 128 IPR001289 GO:0003700|GO:0006355
Vium320g00001 166 ProSiteProfiles NF-YA/HAP2 family profile. 13 73 IPR001289 GO:0003700|GO:0006355
Vium320g00001 166 MobiDBLite consensus disorder prediction 64 101 - -
Vium320g00001 166 ProSitePatterns NF-YA/HAP2 subunit signature. 18 38 IPR018362 GO:0003677|GO:0016602
Vium320g00001 166 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 15 70 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium320g00001 Vium-Chr320 7 1926 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium320g00001 1 102 CCAAT-HAP2 Transcription Factor Family AT3G20910 60.784 2.23e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vium320g00001 CBFB_NFYA 1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium320g00001 K08064 - gmx:100789738 244.588