LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium3209g00003	ATGCCGGCTCTGAGAATTCATGGATATGCCTTGGCTCTTTCGTTTTGTCTTATCACCTTCATAGCAGCATCACGACGAACAGACCCTTCAGAAGTTAATGCGCTGATAGACATCAAGAAAAGTTTGATTGATCCTAAGAACAATCTTAAGAACTGGAATAAAGGAGACCCATGTGCAAGAAACTGGACTGGGGTATGGTGTTTTGATAAGACGGGGGATGATGGGTATTTCCATATTCGTGAGATCTACTTAATGACAATGAATCTCTCGGGAAGTCTATCATCTCAGCTTGGTCAGCTATCCCATCTTGAGATAATGGATTTCATGTGGAACAATCTGACAGGCACGATACCAAAGGAGATTGGAAACATTAAAACATTGAAACTCTTGCTCTTGAATGGCAATATGTTATCTGGGAGTTTACCAGACGAGCTTGGCAACCTTCCAAATTTAAATAGATTCCAAGTAGACGAAAACCAATTGTCTGGTTCTATACCAGATTCACTTGCCAACATGACTAGTGTTAAACACCTTCACCTGAACAACAACTCTTTTAGTGGTCAACTTCCATCTACACTTTCAAAGTTATCAAATCTGATGCATTTGCTTGTGGACAACAATAACTTATCTGGAAATCTTCCACCAGAATACTCCATGTTAAATGGATTGGCAATACTCCAGCTTGATAACAACAACTTTAGCGGGAATGGAATTCCTTCTACCTATGCAAACTTAACCAGGCTAGTGAAATTAAGTCTAAGAAACTGCAGTCTGCGAGGAGCTATTCCTGATTTCAGTTCAATACCCAAGCTTACCTATTTAGATCTTAGCTGGAATCAATTCACTGGACCCTTACCATCAAATAAGCTGGCAGACAATATGACAACTATTGATCTGTCCAATAATCTTCTGAACGGATCTATTCCTCGAAGCTACTCTTATCCTCATCTTCAAAAATTGTCACTTGCGAATAATTTACTGTTGGGTTCCATCCCTGCTAGCATATGGCAGAATATGTCCTTCAGTGTGAAAGATAAACTTATGATTGATCTCCATAACAACTCATTTGAGGATGTTTCGGGAAATCTGAACCCCCCGGCAAATGTTACCTTGAGGCTTTCTGGTAATCCTATATGCAAGAACTCCAACGCACAAAGTGCTATTAAATATTGTGGACCTGAAGAAGATAAGGCAGTTCAAGACTTAACAAGCTCTACCGTTTGTCATGTTCAATCTTGTCCATTTGATGACTTTTATGAATACGCCCCTAATTCCCCAGTTCCTTGCTATTGTGCTGCACCTCTGAGAATTGGATACAGGCTGAAAAGTCCAAGTTTTTCTTACTTTGCTCCCTATAGATCTAGTTTTGAACACTACATAACTGACTCCCTAAAACTACACCTCTACCAACTATCAGTAGATTCTGTAGCTTGGGAAGAGGGACCTCGTCTTAGAATGTATTTGAAACTCTTCCCTTCCTATAATGATTCCCGTTCTAATGTGTTCAATGTAAGTGAGGTTCGTCGGATTAGCCGCCAATTCTCATCATGGCGATTTCCTCGCACTGATTTTTTTGGACCATATGAACTCCTGAACTTCACTCTTCTTGGACCTTATGAAAATTTAATTATTGATTCGGAGAAGGGAAAAGTTAATGTTGGCATAAAAGTTGCTGTTGTAATAGCAGCTGCTGCCTGTGCTTTAGCAATATCTGCAATAATCATTCTCCTGATTACTAGAAGAAAGATGAAATACCAGAAGAAGATTTCCAGGAAATCTACTACTAATATATCCCTCAAAATAGATGGCATGAAAGCATTTACTTACAAAGAACTGGCTCTTGCTACTAACAAATTCAATATCTCAACTAAAGTCGGTCAAGGAGGTTATGGGAATGTCTATAAAGGCATTTTATCTGATGAAAATTTTGTGGCGGTTAAGAGAGCAGAAGAAGGTTCCTTACAAGGACAAAGGGAGTTCTTGACAGAGATTGAGCTTCTGTCAAGGTTACACCATCGAAATCTTGTCTCACTGATTGGATACTGTAATGAAGAAGGGGAACAGATGCTGGTTTATGAATTCATGCCCAATGGCACCCTAAGGGACTGGATTTCTGGAAGAAGTAGAAAAACGAAGGGGAGCCTAAATTTTAGTACGAGGTTGTGAATTGCAATGGGAGCAGCCAAAGGCATACTGTATCTTCATACAGAGGCTAACCCTCCTATATTCCACAGAGATATTAAAGCCAGTAACATTCTTCTTGACTCCAAGTTTACAGCTAAAGTGGCCGATTTTGGACTCTCACGGCTTGTACCAGACTTAGATGAAGAGGGAACTGCTCCTAAATATGTGTCAACAGTTGTGAGAGGAACTCCAGGTTACCTGGACCCAGAATATTTGTTGACTCATAAGCTGACAGACAAATGTGATGTCTATAGCCTGGGAATTGTGTATCTAGAGCTTTTAACAGGCATGCAACCAATTTCTCATGGAAAAAACATTGTTCGCGAGGTTAACATGGCTCATCAATCTGGCACAGTATCTTCCATCATAGACAGCAGAATTGGGTTGTATACATCTGAATGCTTGGAAAAATTCTTAACTCTGGCCCTCAGTTGTTGCCAAGACAATCCAGAGGAGAGACCATCAATGATAGATGTGGTGAGGACACTGGAAGATATCATTGCAATGTTGCCTGAAGCTGAAACTGTTTACTCAGATGTTAGCTTAGACAGTTCTGGCAACATAGCACCACCCTCATCATCAGCATCAACATCAGCATCCCATGTAGCAAGGGAGGAGCAACACATGTCCTCATATGTGTCTGGAAGCAATCTTGTCAGTGATGTCATTCCCACCATTGTTCCTCGCTGA	2874	0.405	MPALRIHGYALALSFCLITFIAASRRTDPSEVNALIDIKKSLIDPKNNLKNWNKGDPCARNWTGVWCFDKTGDDGYFHIREIYLMTMNLSGSLSSQLGQLSHLEIMDFMWNNLTGTIPKEIGNIKTLKLLLLNGNMLSGSLPDELGNLPNLNRFQVDENQLSGSIPDSLANMTSVKHLHLNNNSFSGQLPSTLSKLSNLMHLLVDNNNLSGNLPPEYSMLNGLAILQLDNNNFSGNGIPSTYANLTRLVKLSLRNCSLRGAIPDFSSIPKLTYLDLSWNQFTGPLPSNKLADNMTTIDLSNNLLNGSIPRSYSYPHLQKLSLANNLLLGSIPASIWQNMSFSVKDKLMIDLHNNSFEDVSGNLNPPANVTLRLSGNPICKNSNAQSAIKYCGPEEDKAVQDLTSSTVCHVQSCPFDDFYEYAPNSPVPCYCAAPLRIGYRLKSPSFSYFAPYRSSFEHYITDSLKLHLYQLSVDSVAWEEGPRLRMYLKLFPSYNDSRSNVFNVSEVRRISRQFSSWRFPRTDFFGPYELLNFTLLGPYENLIIDSEKGKVNVGIKVAVVIAAAACALAISAIIILLITRRKMKYQKKISRKSTTNISLKIDGMKAFTYKELALATNKFNISTKVGQGGYGNVYKGILSDENFVAVKRAEEGSLQGQREFLTEIELLSRLHHRNLVSLIGYCNEEGEQMLVYEFMPNGTLRDWISGRSRKTKGSLNFSTRLXIAMGAAKGILYLHTEANPPIFHRDIKASNILLDSKFTAKVADFGLSRLVPDLDEEGTAPKYVSTVVRGTPGYLDPEYLLTHKLTDKCDVYSLGIVYLELLTGMQPISHGKNIVREVNMAHQSGTVSSIIDSRIGLYTSECLEKFLTLALSCCQDNPEERPSMIDVVRTLEDIIAMLPEAETVYSDVSLDSSGNIAPPSSSASTSASHVAREEQHMSSYVSGSNLVSDVIPTIVPR	957

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium3209g00003	957	FunFam	Leucine-rich repeat protein kinase family protein	582	694	-	-
	Vium3209g00003	957	SUPERFAMILY	Protein kinase-like (PK-like)	604	919	IPR011009	-
	Vium3209g00003	957	Gene3D	Transferase(Phosphotransferase) domain 1	695	907	-	-
	Vium3209g00003	957	SMART	serkin_6	619	896	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium3209g00003	957	Gene3D	Ribonuclease Inhibitor	28	188	IPR032675	-
	Vium3209g00003	957	PANTHER	RECEPTOR-LIKE PROTEIN 55	38	894	-	-
	Vium3209g00003	957	CDD	STKc_IRAK	625	894	-	-
	Vium3209g00003	957	Gene3D	Ribonuclease Inhibitor	295	414	IPR032675	-
	Vium3209g00003	957	ProSitePatterns	Protein kinases ATP-binding region signature.	625	647	IPR017441	GO:0005524
	Vium3209g00003	957	Gene3D	Ribonuclease Inhibitor	189	294	IPR032675	-
	Vium3209g00003	957	Gene3D	Phosphorylase Kinase; domain 1	579	694	-	-
	Vium3209g00003	957	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	695	907	-	-
	Vium3209g00003	957	SUPERFAMILY	L domain-like	44	385	-	-
	Vium3209g00003	957	Pfam	Protein kinase domain	620	888	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium3209g00003	957	FunFam	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	29	190	-	-
	Vium3209g00003	957	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	742	754	IPR008271	GO:0004672\|GO:0006468
	Vium3209g00003	957	Pfam	Leucine rich repeat N-terminal domain	29	67	IPR013210	-
	Vium3209g00003	957	ProSiteProfiles	Protein kinase domain profile.	619	895	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium3209g00003	Vium-Chr3209	53842	62131	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium3209g00003	5	903	Receptor kinase-like Gene Family	AT5G01950	59.779	0.0	1078

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Vium3209g00003		Pkinase	2.3e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium3209g00003	-		-	gmx:100815005	1582