Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3209g00001 ATGGCAGAGTGGACTGGGGTTTATTGTTTTGATAGGGAGGAGGCTGATGGTTACTTCCATGTCCAAAAGCTCTACTTAATGACTATGAATCTCTCGGGAAGTTTAGCCCCACAGCTTGGTCAGCTATCTCATCTTAAGATACTGTCTTTCATGTGGAACAATTTGACAGGCACAATACCGAAGGAAATTGGAAATATCTTGCCATTGGAACTCTTGCTCCTAAGTGGGAATAAGTTATCTGGTAGTTTACCAGATGAGCTTGGCAACCTTTGGAATTTGGATAGACTCCAAGTTGATGAAAACCAATTGTCAGGTCCTATTCCGGAGTCATTTGGCAACATGGCCAAAGTTAAACATCTCCACATGAATAACAACTCGTTCTGTTGTCAACTTCCTTCCACGCTTTCAAATCTGTCTAATCTTGTGCATTTGCTTGTGGACAACAATAACTTATCTAGTTACCTTCCATCAAATTTCTCTGTCTTACAACGGTTAAGAATACTCCAACTTGATAACAATAATTTCAACGGGAATGAAATTCCTTCCACGTATGAAAACTTCTCCGGTCTAGTGAAACTAACACTGAGAAACTGTAGTCTGCGAGGAAATATTCCTGATTTCAGTTCAATAACCAACCTTAGCTATTTAGATCTTAGCAGGAATCAGTTTACTGGAACTATACCATCAAACAAACTTGCAGACAATATGACAACTATTGATCTATCAAATAATCTTCTCGAAGGACCAATTCCTCTAAGCTTCATATATCCCAATCTTCAAAAACTTCAACAATTTGACAAGGAATTTACTATTGATGGAGTGTATTTTATATTATGTCGTTTTCAAAGTAAATTCATTTTCTTCTTCCTATCTGTGTGCAGCAATCTCGAAAATAACTCATTAGTTGACGTTTTGGGAAATCTGAACCCCCCACCAAATGTTACCTTGAGGCTTTATGGCAATACAGTGTGCGACAATTCTAACATAGAAAATATTGGTCAATATTGTGGACCTGGAGGAGATGAAGAACATGAAGTAGTCAGAAACCCAGAAAATGCATCAAATGTCTGTCCATTTCAAGATTGCCAAGTAGATAATTCCTATGAATTATATGTACCCTCTTTCCCAATTCCTTGCTATTGTGCAGCTCCTCTGATAATTGGATACAGGCTGAAAAGTCCAAGTTTTTCTTACTTTGCTCCCTATTTTTCAATGTTTGTATTATATATAACTGATTCCTTAAGCTTAGAACGCTATCAGTTATCAATATCTGCTTGGGAAGATGGAAACCGTATAACCATGTATTTAAAACTGTTCCCTTCATATGATTCCTACTTAAATATGTTCAACGAAAGTGAGGTCTCTCGTATTAAAACCACATTTACATCATGGGGATTTCCTCCCAATCATTTCTTTGGACCATATGAACTCCTGAGCTTCACTCTTGTTGGACCTTATGCAACTACTACTGATTCAAAGAGGGGTGGATCTAATTCACTCATATTGGGTGCTGCTTTAATATCAGCTGTTGCTAGTATTTTAGCAACATCTGCTCTAATCATTTTACTGCTTTTTAGAAGACGTGCAAAATATCAGCACATGAATTCAAGGAAACATAAGTCCCCTAGTATACACATTAAAATAGACAGTGTTAAAGAATTTAGTTTCATAGAACTGGCTATTGCTACGAACAATTTTAGCAGCTCAACTATAATTGGCAAAGGAGGTTATGGAGATGTCCATAAAGGCATTTTGTCTGGGGAAACACTTGTGGCCATTAAACGAGCAGCAGAAGATTCCTTACAAGGCCAAAAGGAGTTTTTGACTGAGATTGAACTTTTATCGAGGTTACACCACCGAAATCTTGTCTCACTGATTGGATACTGTAATGAAGAAGAGGAGCAGATGCTGGTTTATGAATTCATGCCCAATGGCACCCTAAGGGACTGGATTTCTGGTAGAAGTGAAAAAGCCAAGGAAAGACAAAATTTTGGTATGGGGTTAAAAATTGCATTGGGTGCAGCCAAAGGCGTACTTTATCTTCATACAGAAGCTAACCCTCCTATATTCCACCGAGATATTAAAGCCAGCAACATACTTTTAGACTCCAAATTTACAGCTAAAGTAGCTGATTTTGGACTTTCACGGCTTGCAACAGAAGGATCTGGCACTAAATACCTGTCAACTGTTGTGAAGGGAACACTAGGTTACCTTGACCCAGAATATGTATTGACTCATAAGTTTACTGACAAAAGTGATATCTATAGCCTAGGAGTTGTGTTTCTGGAGCTTTTGACCGGCATGCAGCCAATCTCACGTGGCAAACACATCGTTAACGAGGTTAATGCGGCTTGTCGATCTGGCATGATATATTCCGTTATAGGGAAAAGAATGGGGTTGTATACATCAGATTGCTTGGACAAGTTTTTAACTCTGGCCCTCAGATGTTGCGAAGATAAACCAGAGGAGAGGCCATCAATTCTAGACGTGGTGAGGGAACTAGAAGATATTGCTGCAGTGCTATCACAAAGTGATGAAGCCAGATTCCCAGAACCCATAGATAATTCAGGTGAAATGGCACCCTTATCATCTTCAGGATCTAATGCAGCAAGAGAGGATCAACACAAGTATGCGTATGTGTCAGGAAGTAATCTTGTCAGTGGTGTCATTCCCACCATTGTTCCTCGCTAA 2691 0.3898 MAEWTGVYCFDREEADGYFHVQKLYLMTMNLSGSLAPQLGQLSHLKILSFMWNNLTGTIPKEIGNILPLELLLLSGNKLSGSLPDELGNLWNLDRLQVDENQLSGPIPESFGNMAKVKHLHMNNNSFCCQLPSTLSNLSNLVHLLVDNNNLSSYLPSNFSVLQRLRILQLDNNNFNGNEIPSTYENFSGLVKLTLRNCSLRGNIPDFSSITNLSYLDLSRNQFTGTIPSNKLADNMTTIDLSNNLLEGPIPLSFIYPNLQKLQQFDKEFTIDGVYFILCRFQSKFIFFFLSVCSNLENNSLVDVLGNLNPPPNVTLRLYGNTVCDNSNIENIGQYCGPGGDEEHEVVRNPENASNVCPFQDCQVDNSYELYVPSFPIPCYCAAPLIIGYRLKSPSFSYFAPYFSMFVLYITDSLSLERYQLSISAWEDGNRITMYLKLFPSYDSYLNMFNESEVSRIKTTFTSWGFPPNHFFGPYELLSFTLVGPYATTTDSKRGGSNSLILGAALISAVASILATSALIILLLFRRRAKYQHMNSRKHKSPSIHIKIDSVKEFSFIELAIATNNFSSSTIIGKGGYGDVHKGILSGETLVAIKRAAEDSLQGQKEFLTEIELLSRLHHRNLVSLIGYCNEEEEQMLVYEFMPNGTLRDWISGRSEKAKERQNFGMGLKIALGAAKGVLYLHTEANPPIFHRDIKASNILLDSKFTAKVADFGLSRLATEGSGTKYLSTVVKGTLGYLDPEYVLTHKFTDKSDIYSLGVVFLELLTGMQPISRGKHIVNEVNAACRSGMIYSVIGKRMGLYTSDCLDKFLTLALRCCEDKPEERPSILDVVRELEDIAAVLSQSDEARFPEPIDNSGEMAPLSSSGSNAAREDQHKYAYVSGSNLVSGVIPTIVPR 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3209g00001 896 Gene3D Phosphorylase Kinase; domain 1 535 641 - -
Vium3209g00001 896 ProSiteProfiles Protein kinase domain profile. 566 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3209g00001 896 ProSitePatterns Serine/Threonine protein kinases active-site signature. 689 701 IPR008271 GO:0004672|GO:0006468
Vium3209g00001 896 PANTHER RECEPTOR-LIKE PROTEIN 55 4 837 - -
Vium3209g00001 896 FunFam Nuclear pore complex protein NUP107 1 132 - -
Vium3209g00001 896 Pfam Protein kinase domain 568 832 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3209g00001 896 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 158 250 - -
Vium3209g00001 896 SUPERFAMILY L domain-like 5 264 - -
Vium3209g00001 896 Gene3D Ribonuclease Inhibitor 132 322 IPR032675 -
Vium3209g00001 896 CDD STKc_IRAK 572 837 - -
Vium3209g00001 896 ProSitePatterns Protein kinases ATP-binding region signature. 572 594 IPR017441 GO:0005524
Vium3209g00001 896 SUPERFAMILY Protein kinase-like (PK-like) 539 834 IPR011009 -
Vium3209g00001 896 Gene3D Ribonuclease Inhibitor 1 131 IPR032675 -
Vium3209g00001 896 FunFam Leucine-rich repeat protein kinase family protein 529 641 - -
Vium3209g00001 896 SMART serkin_6 566 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3209g00001 896 Gene3D Transferase(Phosphotransferase) domain 1 642 851 - -
Vium3209g00001 896 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 642 849 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3209g00001 Vium-Chr3209 16261 25638 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3209g00001 2 837 Receptor kinase-like Gene Family AT5G01950 55.962 0.0 884
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vium3209g00001 Pkinase 3.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3209g00001 - - vum:124833501 1725.29